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ds003416-mriqc/logs/sub-cIVs018_10066429.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_470370/ds (dataset)
install(ok): /var/lib/condor/execute/dir_470370/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_470370/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_470370/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:54:44 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:54:44 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:54:44 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:54:45 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:54:45 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:54:45 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215443_16ef3bbe-4fcf-4162-b567-08c0eb9e6282.toml.
2025-10-09 21:54:49 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:54:51 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:54:51 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:54:52 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:54:57 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:55:01 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:55:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/conform".
2025-10-09 21:55:02 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:55:02 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.292776s.
2025-10-09 21:55:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/5a0672751933f24c4aadafbc60529dcdcb4c002f/conform".
2025-10-09 21:55:04 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:55:04 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.714828s.
2025-10-09 21:55:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/sanitize".
2025-10-09 21:55:06 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:06 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.87009s.
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/provenance".
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.022386s.
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/load_bmat".
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.188321s.
2025-10-09 21:55:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/sanitize".
2025-10-09 21:55:10 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:10 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.869675s.
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/e806ab4868fe26e6df63dde6db6ae1931399ec12/provenance".
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021589s.
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/load_bmat".
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:12 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026226s.
2025-10-09 21:55:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/sanitize".
2025-10-09 21:55:14 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:15 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.105446s.
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/df55db65be4137e4b792b252f23058f4ccd14587/provenance".
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.028135s.
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/load_bmat".
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:16 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026369s.
2025-10-09 21:55:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/sanitize".
2025-10-09 21:55:18 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:19 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.088927s.
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/121c9d0fb3c7ade02b2db29695cfed308d043617/provenance".
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.026429s.
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/load_bmat".
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:20 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.049876s.
2025-10-09 21:55:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/sanitize".
2025-10-09 21:55:22 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:22 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.839552s.
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/provenance".
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.02092s.
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/load_bmat".
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.028079s.
2025-10-09 21:55:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/sanitize".
2025-10-09 21:55:26 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:26 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.847631s.
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0e38172833aa34a5fd10f162c145e6a22a4593b4/provenance".
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020574s.
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/load_bmat".
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:28 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.027245s.
2025-10-09 21:55:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/sanitize".
2025-10-09 21:55:30 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:31 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.179414s.
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/aa2ff1304b295349692279340b72d8542506d53f/provenance".
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.026378s.
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/load_bmat".
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025868s.
2025-10-09 21:55:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/sanitize".
2025-10-09 21:55:34 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:35 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.102763s.
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5c0b6053646ee2d7054d91a83805b851b3eb4df4/provenance".
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.027702s.
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/load_bmat".
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026289s.
2025-10-09 21:55:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/pre_clip".
2025-10-09 21:55:38 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:55:48 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.083894s.
2025-10-09 21:55:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/RotationMask".
2025-10-09 21:55:50 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:55:51 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.953932s.
2025-10-09 21:55:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/PlotMosaicNoise".
2025-10-09 21:55:52 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.594576s.
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/pre_clip".
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 11.421507s.
2025-10-09 21:56:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/5a0672751933f24c4aadafbc60529dcdcb4c002f/RotationMask".
2025-10-09 21:56:10 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 1.003763s.
2025-10-09 21:56:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/PlotMosaicNoise".
2025-10-09 21:56:12 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:56:17 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.891312s.
2025-10-09 21:56:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/piesno".
2025-10-09 21:56:20 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:21 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.061888s.
2025-10-09 21:56:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/shells".
2025-10-09 21:56:22 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:22 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000802s.
2025-10-09 21:56:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/piesno".
2025-10-09 21:56:24 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:25 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.029888s.
2025-10-09 21:56:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/shells".
2025-10-09 21:56:26 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:26 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00087s.
2025-10-09 21:56:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/piesno".
2025-10-09 21:56:28 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:29 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.292495s.
2025-10-09 21:56:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/shells".
2025-10-09 21:56:30 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:30 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000794s.
2025-10-09 21:56:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/piesno".
2025-10-09 21:56:32 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.282551s.
2025-10-09 21:56:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/shells".
2025-10-09 21:56:34 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:34 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000704s.
2025-10-09 21:56:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/piesno".
2025-10-09 21:56:36 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:37 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.983267s.
2025-10-09 21:56:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/shells".
2025-10-09 21:56:38 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:38 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000814s.
2025-10-09 21:56:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/piesno".
2025-10-09 21:56:40 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:41 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.047887s.
2025-10-09 21:56:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/shells".
2025-10-09 21:56:42 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:42 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000684s.
2025-10-09 21:56:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/piesno".
2025-10-09 21:56:44 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:45 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.249101s.
2025-10-09 21:56:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/shells".
2025-10-09 21:56:46 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:46 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00071s.
2025-10-09 21:56:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/piesno".
2025-10-09 21:56:48 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.35465s.
2025-10-09 21:56:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/shells".
2025-10-09 21:56:50 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:50 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000733s.
2025-10-09 21:56:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/pre_n4".
2025-10-09 21:56:52 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 129.516232s.
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ds_report_background".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008309s.
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/pre_n4".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 136.426235s.
2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/ds_report_background".
2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.005527s.
2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/dwi_ref".
2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:23 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.325587s.
2025-10-09 22:01:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/get_lowb".
2025-10-09 22:01:24 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:24 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.638237s.
2025-10-09 22:01:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/dwi_ref".
2025-10-09 22:01:26 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:27 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.378279s.
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/get_lowb".
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.389885s.
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/dwi_ref".
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:32 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.769201s.
2025-10-09 22:01:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/get_lowb".
2025-10-09 22:01:32 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:33 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.697561s.
2025-10-09 22:01:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/dwi_ref".
2025-10-09 22:01:34 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:36 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 2.381785s.
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/get_lowb".
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.51784s.
2025-10-09 22:01:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/dwi_ref".
2025-10-09 22:01:40 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:42 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.9056959999999998s.
2025-10-09 22:01:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/get_lowb".
2025-10-09 22:01:44 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:44 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.652896s.
2025-10-09 22:01:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/dwi_ref".
2025-10-09 22:01:46 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:47 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.827255s.
2025-10-09 22:01:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/get_lowb".
2025-10-09 22:01:48 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:49 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.841003s.
2025-10-09 22:01:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/dwi_ref".
2025-10-09 22:01:50 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:51 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.547999s.
2025-10-09 22:01:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/get_lowb".
2025-10-09 22:01:52 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 1.420809s.
2025-10-09 22:01:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/dwi_ref".
2025-10-09 22:01:54 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:55 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.781975s.
2025-10-09 22:01:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/get_lowb".
2025-10-09 22:01:56 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:58 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 2.420697s.
2025-10-09 22:02:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/synthstrip".
2025-10-09 22:02:00 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:03:44 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 103.770752s.
2025-10-09 22:03:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/synthstrip".
2025-10-09 22:03:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:05:17 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 92.641153s.
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/pre_clip".
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.680982s.
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/SharpenEPI".
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.966934s.
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/hmc_b0".
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.030302s.
2025-10-09 22:05:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/pre_clip".
2025-10-09 22:05:54 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.725008s.
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/SharpenEPI".
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:04 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.070971s.
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/hmc_b0".
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.149073s.
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/pre_clip".
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:31 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.74706s.
2025-10-09 22:06:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/SharpenEPI".
2025-10-09 22:06:32 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:40 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.819552s.
2025-10-09 22:06:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/hmc_b0".
2025-10-09 22:06:40 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:08 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.556347s.
2025-10-09 22:07:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/pre_clip".
2025-10-09 22:07:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.709465s.
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/SharpenEPI".
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:18 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.981637s.
2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/hmc_b0".
2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:48 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.947417s.
2025-10-09 22:07:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/pre_clip".
2025-10-09 22:07:50 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:51 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.671661s.
2025-10-09 22:07:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/SharpenEPI".
2025-10-09 22:07:52 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:00 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.008237s.
2025-10-09 22:08:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/hmc_b0".
2025-10-09 22:08:02 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.351793s.
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/pre_clip".
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.722965s.
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/SharpenEPI".
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.375474s.
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/hmc_b0".
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:01 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.859717s.
2025-10-09 22:09:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/pre_clip".
2025-10-09 22:09:02 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:03 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.776651s.
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/SharpenEPI".
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:12 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.162877s.
2025-10-09 22:09:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/hmc_b0".
2025-10-09 22:09:14 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:44 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.512636s.
2025-10-09 22:09:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/pre_clip".
2025-10-09 22:09:44 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:45 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.710554s.
2025-10-09 22:09:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/SharpenEPI".
2025-10-09 22:09:46 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:54 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.270936s.
2025-10-09 22:09:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/hmc_b0".
2025-10-09 22:09:56 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:25 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.273989s.
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/post_n4".
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 30.738695s.
2025-10-09 22:10:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/smoothness".
2025-10-09 22:10:58 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:04 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.891285s.
2025-10-09 22:11:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/PlotMosaicZoomed".
2025-10-09 22:11:06 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.598923s.
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/PlotBrainmask".
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.343304s.
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/post_n4".
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:49 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 31.017866s.
2025-10-09 22:11:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5a0672751933f24c4aadafbc60529dcdcb4c002f/smoothness".
2025-10-09 22:11:50 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:56 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.963109s.
2025-10-09 22:11:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/PlotMosaicZoomed".
2025-10-09 22:11:58 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.702272s.
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/PlotBrainmask".
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:12:08 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.312551s.
2025-10-09 22:12:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/pre_n4".
2025-10-09 22:12:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.354626s.
2025-10-09 22:12:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/pre_n4".
2025-10-09 22:12:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:28 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.062301s.
2025-10-09 22:12:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/pre_n4".
2025-10-09 22:12:30 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:38 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.213772s.
2025-10-09 22:12:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/pre_n4".
2025-10-09 22:12:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:48 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.289691s.
2025-10-09 22:12:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/pre_n4".
2025-10-09 22:12:50 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.267929s.
2025-10-09 22:13:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/pre_n4".
2025-10-09 22:13:00 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:08 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.031236s.
2025-10-09 22:13:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/pre_n4".
2025-10-09 22:13:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.998355s.
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/pre_n4".
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.046481s.
2025-10-09 22:13:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/final_masked".
2025-10-09 22:13:30 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:13:30 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.334946s.
2025-10-09 22:13:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization".
2025-10-09 22:13:32 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:13:33 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:55 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:14:55 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:13 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:15 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:15:15 | INFO | niworkflows | Generating visual report
2025-10-09 22:15:35 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 122.466282s.
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ds_report_zoomed".
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005538s.
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ds_report_bmask".
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005075s.
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/final_masked".
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.329911s.
2025-10-09 22:15:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization".
2025-10-09 22:15:38 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:15:39 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:17:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:17:00 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:17:18 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:17:20 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5a0672751933f24c4aadafbc60529dcdcb4c002f/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:17:20 | INFO | niworkflows | Generating visual report
2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 121.949868s.
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/ds_report_zoomed".
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005534s.
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/ds_report_bmask".
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005308s.
2025-10-09 22:17:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/synthstrip".
2025-10-09 22:17:43 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.515112s.
2025-10-09 22:18:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/synthstrip".
2025-10-09 22:18:36 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:30 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 53.362948s.
2025-10-09 22:19:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/synthstrip".
2025-10-09 22:19:30 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:23 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 53.006678s.
2025-10-09 22:20:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/synthstrip".
2025-10-09 22:20:24 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:17 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.7418s.
2025-10-09 22:21:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/synthstrip".
2025-10-09 22:21:18 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:24 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 65.404211s.
2025-10-09 22:22:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/synthstrip".
2025-10-09 22:22:25 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 64.076011s.
2025-10-09 22:23:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/synthstrip".
2025-10-09 22:23:31 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 63.691641s.
2025-10-09 22:24:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/synthstrip".
2025-10-09 22:24:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:25:38 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 63.105476s.
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ds_report_norm".
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005592s.
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5a0672751933f24c4aadafbc60529dcdcb4c002f/ds_report_norm".
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005545s.
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/post_n4".
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.666093s.
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/sp_mask".
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.646414s.
2025-10-09 22:25:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/drift".
2025-10-09 22:25:45 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:45 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9977, 0.9961, 1.0004, 0.9977, 0.997, 0.9989.
2025-10-09 22:25:46 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.725689s.
2025-10-09 22:25:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/EPI2MNI".
2025-10-09 22:25:47 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:47 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:17 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:17 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:17 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:31 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:31 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:31 | INFO | niworkflows | Generating visual report
2025-10-09 22:27:50 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 123.660596s.
2025-10-09 22:27:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/post_n4".
2025-10-09 22:27:51 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:27:53 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.606841s.
2025-10-09 22:27:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/sp_mask".
2025-10-09 22:27:55 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:27:56 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.698595s.
2025-10-09 22:27:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/drift".
2025-10-09 22:27:57 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:27:57 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0005, 0.9969, 1.0002, 0.9977, 0.9974, 0.9993.
2025-10-09 22:27:59 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.742363s.
2025-10-09 22:27:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/EPI2MNI".
2025-10-09 22:27:59 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:59 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:34 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:34 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:34 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 133.63738s.
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/post_n4".
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6126300000000002s.
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/sp_mask".
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:18 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.942277s.
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/drift".
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:19 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9917, 0.9947, 0.9989, 0.9943, 0.9924, 0.9912, 0.9904, 0.9868.
2025-10-09 22:30:21 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.097466s.
2025-10-09 22:30:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/EPI2MNI".
2025-10-09 22:30:23 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:56 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:56 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:56 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:32:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:32:08 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:32:08 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:27 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 123.771055s.
2025-10-09 22:32:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/post_n4".
2025-10-09 22:32:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6551970000000003s.
2025-10-09 22:32:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/sp_mask".
2025-10-09 22:32:31 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:32 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.985101s.
2025-10-09 22:32:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/drift".
2025-10-09 22:32:33 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:33 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9988, 0.9944, 0.9971, 0.9992, 0.994, 0.9938, 0.994, 0.9973.
2025-10-09 22:32:35 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.146713s.
2025-10-09 22:32:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/EPI2MNI".
2025-10-09 22:32:37 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:37 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:33:10 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/EPI2MNI/stderr.nipype-init).
2025-10-09 22:33:10 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:33:10 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/SharpenEPI/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:34:24 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:34:24 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:34:24 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:44 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 126.625093s.
2025-10-09 22:34:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/post_n4".
2025-10-09 22:34:45 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:48 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.714248s.
2025-10-09 22:34:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/sp_mask".
2025-10-09 22:34:49 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:50 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.641297s.
2025-10-09 22:34:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/drift".
2025-10-09 22:34:51 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:51 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0058, 1.0036, 1.009, 1.0058, 1.0, 1.0026.
2025-10-09 22:34:53 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.684258s.
2025-10-09 22:34:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/EPI2MNI".
2025-10-09 22:34:53 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:53 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:35:25 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:35:25 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:36:41 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:36:41 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:36:41 | INFO | niworkflows | Generating visual report
2025-10-09 22:37:00 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 127.188445s.
2025-10-09 22:37:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/post_n4".
2025-10-09 22:37:01 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:37:04 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.610778s.
2025-10-09 22:37:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/sp_mask".
2025-10-09 22:37:05 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:37:06 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.667485s.
2025-10-09 22:37:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/drift".
2025-10-09 22:37:07 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:37:07 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9754, 0.9946, 0.9979, 0.992, 0.985, 0.9816.
2025-10-09 22:37:09 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.693823s.
2025-10-09 22:37:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/EPI2MNI".
2025-10-09 22:37:09 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:37:09 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:37:42 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/EPI2MNI/stderr.nipype-init).
2025-10-09 22:37:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:37:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:38:58 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:38:58 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:38:58 | INFO | niworkflows | Generating visual report
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 127.82922s.
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/post_n4".
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:39:20 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.667398s.
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/sp_mask".
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.0217s.
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/drift".
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:39:23 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9949, 0.9839, 0.9931, 0.9935, 0.9861, 0.9796, 0.9799, 0.994.
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.149836s.
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/EPI2MNI".
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:39:27 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:40:00 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/EPI2MNI/stderr.nipype-init).
2025-10-09 22:40:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:40:00 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:41:17 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:41:17 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:41:17 | INFO | niworkflows | Generating visual report
2025-10-09 22:41:36 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.563219s.
2025-10-09 22:41:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/post_n4".
2025-10-09 22:41:37 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:41:40 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.627179s.
2025-10-09 22:41:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/sp_mask".
2025-10-09 22:41:41 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:41:42 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.978279s.
2025-10-09 22:41:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/drift".
2025-10-09 22:41:43 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:41:44 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9987, 0.9799, 0.9795, 0.9978, 0.998, 0.9917, 0.9906, 0.9988.
2025-10-09 22:41:45 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.20177s.
2025-10-09 22:41:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/EPI2MNI".
2025-10-09 22:41:47 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:41:47 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:42:21 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/EPI2MNI/stderr.nipype-init).
2025-10-09 22:42:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:42:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/SharpenEPI/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:43:36 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:43:36 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:43:36 | INFO | niworkflows | Generating visual report
2025-10-09 22:43:55 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.184423s.
2025-10-09 22:43:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/final_masked".
2025-10-09 22:43:57 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:57 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.036069s.
2025-10-09 22:43:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/dwidenoise".
2025-10-09 22:43:59 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 23.107437s.
2025-10-09 22:44:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/ResampleSegmentation".
2025-10-09 22:44:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:27 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.064143s.
2025-10-09 22:44:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/final_masked".
2025-10-09 22:44:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038118s.
2025-10-09 22:44:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/dwidenoise".
2025-10-09 22:44:31 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:54 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.783729s.
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/e806ab4868fe26e6df63dde6db6ae1931399ec12/ResampleSegmentation".
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.093111s.
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df55db65be4137e4b792b252f23058f4ccd14587/final_masked".
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038039s.
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/dwidenoise".
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:45:45 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 41.48046s.
2025-10-09 22:45:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df55db65be4137e4b792b252f23058f4ccd14587/ResampleSegmentation".
2025-10-09 22:45:45 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:49 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.074425s.
2025-10-09 22:45:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/final_masked".
2025-10-09 22:45:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038517s.
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/dwidenoise".
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:34 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 40.811557s.
2025-10-09 22:46:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/121c9d0fb3c7ade02b2db29695cfed308d043617/ResampleSegmentation".
2025-10-09 22:46:35 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:39 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.025191s.
2025-10-09 22:46:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/final_masked".
2025-10-09 22:46:41 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:41 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038666s.
2025-10-09 22:46:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/dwidenoise".
2025-10-09 22:46:43 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:06 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.131831s.
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/ResampleSegmentation".
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.907231s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/final_masked".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.053851s.
2025-10-09 22:47:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/dwidenoise".
2025-10-09 22:47:15 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:38 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.228725s.
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0e38172833aa34a5fd10f162c145e6a22a4593b4/ResampleSegmentation".
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.778434s.
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/aa2ff1304b295349692279340b72d8542506d53f/final_masked".
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037909s.
2025-10-09 22:47:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/dwidenoise".
2025-10-09 22:47:45 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 39.737713s.
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/aa2ff1304b295349692279340b72d8542506d53f/ResampleSegmentation".
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:29 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.963569s.
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/final_masked".
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035947s.
2025-10-09 22:48:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/dwidenoise".
2025-10-09 22:48:33 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:49:12 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.714699s.
2025-10-09 22:49:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5c0b6053646ee2d7054d91a83805b851b3eb4df4/ResampleSegmentation".
2025-10-09 22:49:13 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.58522s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/dwimodel".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:21 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.892386s.
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/estimate_sigma".
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038561s.
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/get_wm".
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.063539s.
2025-10-09 22:49:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/dwimodel".
2025-10-09 22:49:27 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.971658s.
2025-10-09 22:49:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/e806ab4868fe26e6df63dde6db6ae1931399ec12/estimate_sigma".
2025-10-09 22:49:33 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:33 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.03829s.
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/get_wm".
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036152s.
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/dwimodel".
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:42 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.273864s.
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/df55db65be4137e4b792b252f23058f4ccd14587/estimate_sigma".
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039039s.
2025-10-09 22:49:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/get_wm".
2025-10-09 22:49:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036919s.
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/dwimodel".
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:52 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.273218s.
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/121c9d0fb3c7ade02b2db29695cfed308d043617/estimate_sigma".
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037703s.
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/get_wm".
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.037273s.
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/dwimodel".
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.863601s.
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/estimate_sigma".
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039661s.
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/get_wm".
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.037079s.
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/dwimodel".
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.822477s.
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0e38172833aa34a5fd10f162c145e6a22a4593b4/estimate_sigma".
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038344s.
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/get_wm".
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.03781s.
2025-10-09 22:50:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/dwimodel".
2025-10-09 22:50:13 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.323991s.
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/aa2ff1304b295349692279340b72d8542506d53f/estimate_sigma".
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038258s.
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/get_wm".
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035601s.
2025-10-09 22:50:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/dwimodel".
2025-10-09 22:50:23 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.311293s.
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5c0b6053646ee2d7054d91a83805b851b3eb4df4/estimate_sigma".
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037288s.
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/get_wm".
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034862s.
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/cc_mask".
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:34 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.532065s.
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/mosaic_fa".
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:37 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.326907s.
2025-10-09 22:50:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/mosaic_md".
2025-10-09 22:50:37 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:39 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.408264s.
2025-10-09 22:50:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/plot_heatmap".
2025-10-09 22:50:39 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:41 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.487036s.
2025-10-09 22:50:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/e806ab4868fe26e6df63dde6db6ae1931399ec12/cc_mask".
2025-10-09 22:50:41 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:42 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.50675s.
2025-10-09 22:50:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/mosaic_fa".
2025-10-09 22:50:43 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:45 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.4293339999999999s.
2025-10-09 22:50:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/mosaic_md".
2025-10-09 22:50:45 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:47 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.668844s.
2025-10-09 22:50:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/plot_heatmap".
2025-10-09 22:50:47 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.166259s.
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/df55db65be4137e4b792b252f23058f4ccd14587/cc_mask".
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:50 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.517941s.
2025-10-09 22:50:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/mosaic_fa".
2025-10-09 22:50:51 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:53 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.453527s.
2025-10-09 22:50:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/mosaic_md".
2025-10-09 22:50:53 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.6657220000000001s.
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/plot_heatmap".
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.266029s.
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/121c9d0fb3c7ade02b2db29695cfed308d043617/cc_mask".
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:58 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508387s.
2025-10-09 22:50:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/mosaic_fa".
2025-10-09 22:50:59 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:01 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.509572s.
2025-10-09 22:51:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/mosaic_md".
2025-10-09 22:51:01 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:03 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.5804390000000001s.
2025-10-09 22:51:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/plot_heatmap".
2025-10-09 22:51:03 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:05 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.223294s.
2025-10-09 22:51:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/cc_mask".
2025-10-09 22:51:05 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.497133s.
2025-10-09 22:51:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/mosaic_fa".
2025-10-09 22:51:07 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.499647s.
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/mosaic_md".
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:11 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.70485s.
2025-10-09 22:51:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/plot_heatmap".
2025-10-09 22:51:11 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:13 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.156316s.
2025-10-09 22:51:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/0e38172833aa34a5fd10f162c145e6a22a4593b4/cc_mask".
2025-10-09 22:51:13 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.525909s.
2025-10-09 22:51:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/mosaic_fa".
2025-10-09 22:51:15 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:17 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.536118s.
2025-10-09 22:51:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/mosaic_md".
2025-10-09 22:51:17 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:19 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.405257s.
2025-10-09 22:51:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/plot_heatmap".
2025-10-09 22:51:19 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.3948450000000001s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/aa2ff1304b295349692279340b72d8542506d53f/cc_mask".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.505929s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/mosaic_fa".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:25 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.376711s.
2025-10-09 22:51:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/mosaic_md".
2025-10-09 22:51:25 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:27 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.7170260000000002s.
2025-10-09 22:51:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/plot_heatmap".
2025-10-09 22:51:27 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:29 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.246022s.
2025-10-09 22:51:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/5c0b6053646ee2d7054d91a83805b851b3eb4df4/cc_mask".
2025-10-09 22:51:29 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:30 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508896s.
2025-10-09 22:51:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/mosaic_fa".
2025-10-09 22:51:31 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.447119s.
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/mosaic_md".
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:35 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.485883s.
2025-10-09 22:51:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/plot_heatmap".
2025-10-09 22:51:35 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:37 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.2087729999999999s.
2025-10-09 22:51:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/ds_report_fa".
2025-10-09 22:51:37 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:37 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004885s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/ds_report_md".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004868s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1a23fa468bf1f288a6490eff39a7e08cd2ab15dc/ds_report_hm".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.007872s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/ds_report_fa".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004706s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/ds_report_md".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004712s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/e806ab4868fe26e6df63dde6db6ae1931399ec12/ds_report_hm".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004678s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/ds_report_fa".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004649s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/ds_report_md".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004851s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df55db65be4137e4b792b252f23058f4ccd14587/ds_report_hm".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004672s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/ds_report_fa".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004677s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/ds_report_md".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004723s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/121c9d0fb3c7ade02b2db29695cfed308d043617/ds_report_hm".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004934s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/ds_report_fa".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005418s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/ds_report_md".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005577s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/24df4c8f28df8a1ae08e086bafb0aa0da0c0d00a/ds_report_hm".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004705s.
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/ds_report_fa".
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004828s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/ds_report_md".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004751s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0e38172833aa34a5fd10f162c145e6a22a4593b4/ds_report_hm".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005006s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/ds_report_fa".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004844s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/ds_report_md".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005133s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/aa2ff1304b295349692279340b72d8542506d53f/ds_report_hm".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004632s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/ds_report_fa".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004795s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/ds_report_md".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004656s.
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5c0b6053646ee2d7054d91a83805b851b3eb4df4/ds_report_hm".
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004725s.
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:51:50 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 9.265891s.
2025-10-09 22:51:51 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:51:51 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:52:00 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 9.076667s.
2025-10-09 22:52:01 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:52:01 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:52:10 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 8.993657s.
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/Enhance".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.610314s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/format_tpm_names".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.8393929999999998s.
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/Grad".
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:23 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.5326260000000005s.
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/apply_mask".
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.28115s.
2025-10-09 22:52:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/GradientThreshold".
2025-10-09 22:52:27 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:40 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.506769s.
2025-10-09 22:52:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/segmentation".
2025-10-09 22:52:41 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:54:15 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 93.950728s.
2025-10-09 22:54:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ArtifactMask".
2025-10-09 22:54:17 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:54:23 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.320544s.
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/PlotHeadmask".
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:28 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.055802s.
2025-10-09 22:54:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/harmonize".
2025-10-09 22:54:29 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:54:30 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.004463s.
2025-10-09 22:54:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/PlotSegmentation".
2025-10-09 22:54:31 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:34 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.55602s.
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/provenance".
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.060453s.
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ComputeQI2".
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.262043s.
2025-10-09 22:54:35 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:54:35 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/57e8f371c0e265d5d5b13f76c1b5ababc8ee1309/ComputeQI2)
2025-10-09 22:54:35 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_470370/ds/logs/crash-20251009-225435-fhoffstaedter-ComputeQI2.a0-e7d9f8c7-21af-40c8-94a8-396d49549b0b.txt
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/anat/sub-cIVs018_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx1/dwi/sub-cIVs018_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/anat/sub-cIVs018_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018/ses-s1Bx2/dwi/sub-cIVs018_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs018 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_470370/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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