Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0059/figures/sub-EBE0059_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0059/figures/sub-EBE0059_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0059/func/sub-EBE0059_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume92c9d594ee1955739dddad8f3d3b120

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime19:49:8.000000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.997138, -0.0418599, 0.0629516, 0.0599395, 0.945213, -0.320906]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU - CBI
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0570743
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[328, -12687, -8417, 496, 27, -287, 23, 60]
SliceThickness2
SliceTiming[0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp213.253
WipMemBlock7a664c0b-004a-4bd3-8182-aedf6b13015a||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9942766427993774, 0.11987908184528351, 0.09213914722204208, 97.05794525146484], [0.08371976763010025, 1.8904250860214233, -0.6475212574005127, -74.49995422363281], [0.1259032040834427, 0.6418113708496094, 1.890033483505249, -76.19029235839844], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.005266962025316456
aqi0.024690413639240506
dummy_trs0
dvarsnstd42.76785272285714
dvarsstd1.0696730193015878
dvarsvstd1.0181328179365077
efc0.5918
fber196.7311
fdmean0.18015964510491533
fdnum74
fdperc23.417721518987342
fwhmavg3.7481267474287794
fwhmx3.441385
fwhmy3.738105
fwhmz4.064890242286339
gcor0.0095605
gsrx-0.011117301881313324
gsry0.061409614980220795
sizet316
sizex104
sizey104
sizez64
snr2.193819413890817
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz1.9999998807907104
summarybgk66.7685
summarybgmad164.3014
summarybgmean1176.5235
summarybgmedian631.0
summarybgn498078.0
summarybgp05510.0
summarybgp953765.0
summarybgstdv1823.595
summaryfgk1.2199
summaryfgmad3548.207
summaryfgmean9445.0605
summaryfgmedian8854.0
summaryfgn194146.0
summaryfgp053739.0
summaryfgp9517058.0
summaryfgstdv4035.8733
tsnr25.326248994329944
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