Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0034/figures/sub-EBE0034_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0034/figures/sub-EBE0034_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0034/func/sub-EBE0034_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum475e824457f18303dd8021072a7f72e2

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime18:12:47.705000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.996868, 0.0772125, 0.0170962, -0.0588757, 0.868934, -0.491414]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU Center for Brain Imaging
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0750448
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[287, -12637, -8467, 355, -25, -151, -21, 21]
SliceThickness2
SliceTiming[0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp248.834
WipMemBlock69f9c240-cff4-4ba3-80dd-29d60c631424||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9937361478805542, -0.11775139719247818, 0.10559748113155365, 108.27897644042969], [-0.15442506968975067, 1.7378681898117065, -0.9777357578277588, -42.15561294555664], [0.03419237211346626, 0.9828270077705383, 1.741517186164856, -85.99150085449219], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00045761904761904763
aqi0.008580201365079365
dummy_trs1
dvarsnstd40.802064373566836
dvarsstd1.053015795159236
dvarsvstd0.9952291969745218
efc0.634
fber156.0636
fdmean0.16113760196265817
fdnum79
fdperc25.07936507936508
fwhmavg3.55238
fwhmx3.37214
fwhmy3.602205
fwhmz3.682795
gcor0.00570896
gsrx-0.019567472860217094
gsry0.12651802599430084
sizet315
sizex104
sizey104
sizez64
snr2.0052228445907163
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk33.7653
summarybgmad224.8142
summarybgmean1705.7296
summarybgmedian692.0
summarybgn465734.0
summarybgp05528.0
summarybgp956651.0
summarybgstdv2810.4534
summaryfgk1.4747
summaryfgmad3860.0001
summaryfgmean9386.7248
summaryfgmedian8648.0
summaryfgn226490.0
summaryfgp053597.0
summaryfgp9517398.0
summaryfgstdv4312.7281
tsnr34.20815170370042
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