Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0030/figures/sub-EBE0030_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0030/figures/sub-EBE0030_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0030/func/sub-EBE0030_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1927f88e6316772278405c2d455bbaf8

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime18:22:42.540000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.99763, -0.0247491, 0.0642044, 0.0517598, 0.884729, -0.463223]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU - CBI
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0582788
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[330, -12558, -8434, 461, 141, 322, -118, 115]
SliceThickness2
SliceTiming[0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp212.994
WipMemBlockfe3110ec-5e9d-4705-8209-c5f490603cc0||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9952596426010132, 0.10351963341236115, 0.09067833423614502, 95.84178161621094], [0.049498118460178375, 1.7694584131240845, -0.9308958053588867, -65.47582244873047], [0.1284087747335434, 0.9264452457427979, 1.7678264379501343, -83.02824401855469], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
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fdperc25.632911392405063
fwhmavg3.306146666666667
fwhmx3.20522
fwhmy3.443825
fwhmz3.269395
gcor0.00681212
gsrx-0.010872301645576954
gsry0.06829959899187088
sizet316
sizex104
sizey104
sizez64
snr2.0243945676831365
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk47.3162
summarybgmad88.243
summarybgmean981.8824
summarybgmedian566.0
summarybgn519161.0
summarybgp05501.0
summarybgp953090.0
summarybgstdv1308.7088
summaryfgk1.2487
summaryfgmad3837.1852
summaryfgmean9506.9101
summaryfgmedian8932.0
summaryfgn173063.0
summaryfgp052905.0
summaryfgp9517776.0
summaryfgstdv4412.1706
tsnr36.18710430711508
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