Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0011/figures/sub-EBE0011_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0011/figures/sub-EBE0011_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0011/func/sub-EBE0011_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5bef13e034e24299214c70fe74e70f18

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime10:31:53.315000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.999344, 0.0165074, -0.0322359, -0.0232018, 0.975253, -0.219869]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU Center for Brain Imaging
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0605224
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[263, -12669, -8434, 440, -51, -73, -121, 4]
SliceThickness2
SliceTiming[0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp226.349
WipMemBlockf2eeb97d-b003-4a4a-b4e9-1348111dd412||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9986878633499146, -0.04640359431505203, -0.05561741814017296, 108.3336181640625], [-0.03301480785012245, 1.9505069255828857, -0.4409452974796295, -69.93618774414062], [-0.06447180360555649, 0.4397379159927368, 1.949993371963501, -71.67251586914062], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0005338412698412698
aqi0.009045962158730159
dummy_trs1
dvarsnstd44.305501925859865
dvarsstd1.0724597376751581
dvarsvstd0.9909932564331209
efc0.6134
fber173.6889
fdmean0.07889425258694957
fdnum0
fdperc0.0
fwhmavg2.7808116666666667
fwhmx2.666815
fwhmy2.880615
fwhmz2.795005
gcor0.00261971
gsrx-0.018383944407105446
gsry0.10273316502571106
sizet315
sizex104
sizey104
sizez64
snr2.302745532174875
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk19.5855
summarybgmad112.1742
summarybgmean1335.7021
summarybgmedian595.0
summarybgn514133.0
summarybgp05512.0
summarybgp955509.0
summarybgstdv1896.9734
summaryfgk0.8015
summaryfgmad3014.2758
summaryfgmean8238.4654
summaryfgmedian7836.0
summaryfgn178091.0
summaryfgp052902.0
summaryfgp9514368.0
summaryfgstdv3402.8849
tsnr33.5744873250369
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Rater confidence

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