Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0006/figures/sub-EBE0006_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0006/figures/sub-EBE0006_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0006/func/sub-EBE0006_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum2f6a7b2cac74c83f980afa7b86fc00ce

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime16:26:15.890000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.998815, 0.0464887, 0.0143786, -0.0455307, 0.997099, -0.0609993]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU Center for Brain Imaging
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0637488
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[306, -12691, -8461, 378, 12, -152, 88, 70]
SliceThickness2
SliceTiming[0, 0.56, 1.1175, 0.4, 0.9575, 0.24, 0.7975, 0.08, 0.64, 1.1975, 0.48, 1.0375, 0.32, 0.8775, 0.16, 0.7175, 0, 0.56, 1.1175, 0.4, 0.9575, 0.24, 0.7975, 0.08, 0.64, 1.1975, 0.48, 1.0375, 0.32, 0.8775, 0.16, 0.7175, 0, 0.56, 1.1175, 0.4, 0.9575, 0.24, 0.7975, 0.08, 0.64, 1.1975, 0.48, 1.0375, 0.32, 0.8775, 0.16, 0.7175, 0, 0.56, 1.1175, 0.4, 0.9575, 0.24, 0.7975, 0.08, 0.64, 1.1975, 0.48, 1.0375, 0.32, 0.8775, 0.16, 0.7175]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp209.485
WipMemBlock3e87db10-5941-414d-95d6-f920b1772617||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9976305961608887, -0.0910613015294075, 0.034345418214797974, 106.98051452636719], [-0.09297734498977661, 1.9941976070404053, -0.12054470181465149, -77.62886810302734], [0.02875729463994503, 0.12199857085943222, 1.9960684776306152, -37.49895095825195], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0013994920634920636
aqi0.01558726377777778
dummy_trs1
dvarsnstd42.78297876245222
dvarsstd1.0608128990127383
dvarsvstd0.9673459701592357
efc0.5762
fber245.6167
fdmean0.0907641101465204
fdnum7
fdperc2.2222222222222223
fwhmavg3.192676666666667
fwhmx3.14761
fwhmy3.368555
fwhmz3.061865
gcor0.00546139
gsrx-0.02723664976656437
gsry0.10115236043930054
sizet315
sizex104
sizey104
sizez64
snr2.0823616456740566
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk21.2239
summarybgmad90.7306
summarybgmean1019.2454
summarybgmedian574.0
summarybgn504015.0
summarybgp05507.0
summarybgp953453.0
summarybgstdv1170.8855
summaryfgk0.8255
summaryfgmad3847.103
summaryfgmean9518.7506
summaryfgmedian8989.0
summaryfgn188209.0
summaryfgp052677.0
summaryfgp9517309.0
summaryfgstdv4316.7219
tsnr29.781785105005838
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