Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-EBE0003/figures/sub-EBE0003_task-rest_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-EBE0003/figures/sub-EBE0003_task-rest_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-EBE0003/func/sub-EBE0003_task-rest_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum54e3e641e8949361159804e8fdf07ea5

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime16:41:3.245000
BandwidthPerPixelPhaseEncode17.17
BaseResolution104
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DerivedVendorReportedEchoSpacing0.000560011
DeviceSerialNumber166018
DwellTime2.1e-06
EchoTime0.035
EchoTrainLength104
EffectiveEchoSpacing0.000560011
FlipAngle62
ImageCommentsUnaliased MB4/PE3/LB
ImageOrientationPatientDICOM[0.994982, -0.092685, 0.0376869, 0.0975589, 0.98231, -0.159844]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.197
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWashington Place 6,NYC,NYC,US,10003
InstitutionNameNYU Center for Brain Imaging
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth2290
ProcedureStepDescriptionInvestigators^Blanco-Elorrieta
ProtocolNameepi_MB4_2mm_task-rest
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RepetitionTime1.3
SAR0.0557253
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_104
SequenceVariantSK\SS
SeriesDescriptionepi_MB4_2mm_task-rest
SeriesNumber11
ShimSetting[338, -12585, -8616, 259, 46, 0, 127, 34]
SliceThickness2
SliceTiming[0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72, 0, 0.56, 1.12, 0.4, 0.96, 0.24, 0.8, 0.08, 0.64, 1.2, 0.48, 1.04, 0.32, 0.88, 0.16, 0.72]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166018
TaskNamerest
TotalReadoutTime0.0576811
TxRefAmp210.462
WipMemBlockf66f3b08-8c9d-46f2-bf7d-76f197f3118c||Sequence: R016 ve11c/master r/8780670; Nov 27 2017 15:05:12 by eja
dcmmetaaffine[[-1.9899640083312988, 0.19511781632900238, 0.04440999776124954, 99.83555603027344], [0.18536993861198425, 1.9646191596984863, -0.3254375755786896, -71.98944091796875], [0.07537370175123215, 0.3196884095668793, 1.972845196723938, -50.161006927490234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 103.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[104, 104, 64, 316]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.004444190476190477
aqi0.01748985596825397
dummy_trs1
dvarsnstd53.32860382977709
dvarsstd1.1796722718471333
dvarsvstd1.033729516783439
efc0.5696
fber213.4702
fdmean0.2735253942560243
fdnum195
fdperc61.904761904761905
fwhmavg3.5217183333333337
fwhmx3.294765
fwhmy3.773485
fwhmz3.496905
gcor0.0165227
gsrx-0.017282096669077873
gsry0.1088225394487381
sizet315
sizex104
sizey104
sizez64
snr1.8559832201932913
spacingtr1.2999999523162842
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk19.0487
summarybgmad125.4611
summarybgmean1202.82
summarybgmedian621.0
summarybgn516365.0
summarybgp05531.0
summarybgp954373.0
summarybgstdv1578.9854
summaryfgk3.1232
summaryfgmad3937.1704
summaryfgmean9726.9415
summaryfgmedian9080.0
summaryfgn175859.0
summaryfgp052264.0
summaryfgp9518455.0
summaryfgstdv4892.2717
tsnr27.72372583975084
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