No description
  • HTML 99.5%
  • Shell 0.5%
Find a file
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter ddb153c098 [DATALAD RUNCMD] run MRIQC classifier
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "3fc6459a-db1f-4a5e-9602-e3e9acb3c3a2",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-03-27 01:35:06 +01:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-27 00:53:09 +01:00
code SLURM submission setup 2026-03-27 00:53:20 +01:00
duct-logs Merge results 2026-03-27 01:34:10 +01:00
sourcedata Register ds005573 BIDS dataset as input 2026-03-27 00:53:15 +01:00
sub-EP175 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP178 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP179 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP180 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP181 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP182 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP184 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP185 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP186 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP187 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP188 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP189 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP190 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP191 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP193 move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP195 move data to dataset root 2026-03-27 01:34:20 +01:00
.bidsignore move data to dataset root 2026-03-27 01:34:20 +01:00
.gitattributes keep non-binary files in git 2026-03-27 00:52:58 +01:00
.gitignore SLURM submission setup 2026-03-27 00:53:20 +01:00
.gitmodules Register ds005573 BIDS dataset as input 2026-03-27 00:53:15 +01:00
CHANGELOG.md Apply YODA dataset setup 2026-03-27 00:52:56 +01:00
dataset_description.json move data to dataset root 2026-03-27 01:34:20 +01:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 01:34:50 +01:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 01:34:50 +01:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 01:34:50 +01:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 01:34:50 +01:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-03-27 01:35:06 +01:00
README.md add README with Acknowledgements 2026-03-27 00:52:58 +01:00
sub-EP175_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP175_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP175_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP178_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP178_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP178_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP179_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP179_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP179_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP180_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP180_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP180_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP181_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP181_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP181_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP182_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP182_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP182_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP184_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP184_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP184_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP185_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP185_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP185_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP186_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP186_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP186_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP187_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP187_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP187_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP188_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP188_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP188_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP189_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP189_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP189_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP190_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP190_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP190_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP191_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP191_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP191_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP193_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP193_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP193_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP195_rec-defaced_T1w.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP195_task-rest_run-01_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00
sub-EP195_task-rest_run-02_bold.html move data to dataset root 2026-03-27 01:34:20 +01:00

ds005573 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds005573.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).