15 lines
651 B
Shell
Executable file
15 lines
651 B
Shell
Executable file
#!/bin/bash -x
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export JOBID=ds005357_postpro.${SLURM_JOB_ID} REPRONIM_USE_DUCT=1
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# use subject specific folder
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mkdir /local/nvme/${JOBID}
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cd /local/nvme/${JOBID}
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# run things
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/p/project1/icei-hbp-00000000004/QCworkflow/openneuro-qc/openneuro-mriqc_local/ds005357-mriqc/code/results.merger https://hub.trr379.de/f.hoffstaedter/ds005357-mriqc >/p/project1/icei-hbp-00000000004/QCworkflow/openneuro-qc/openneuro-mriqc_local/ds005357-mriqc/logs/${JOBID}.out 2>/p/project1/icei-hbp-00000000004/QCworkflow/openneuro-qc/openneuro-mriqc_local/ds005357-mriqc/logs/${JOBID}.err
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cd /local/nvme/
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chmod 777 -R /local/nvme/${JOBID}
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rm -fr /local/nvme/${JOBID}
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