Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-164/figures/sub-164_ses-3_task-langLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-164/ses-3/func/sub-164_ses-3_task-langLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumaa69d9c3b27d267ec52420393f95f480

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime09:29:54.755000
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.999642, -0.0262644, 0.00502781, 0.0267004, 0.990705, -0.133385]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_language_run1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0470856
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_language_run1
SeriesNumber11
ShimSetting[-1181, -1393, 679, 701, -125, -255, -28, -68]
SliceThickness2
SliceTiming[1.075, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamelangLoc
TotalReadoutTime0.0551515
TxRefAmp214.866
dcmmetaaffine[[-1.9992847442626953, 0.05340079963207245, 0.002955583855509758, 96.3221206665039], [0.052528709173202515, 1.9814090728759766, -0.26694390177726746, -69.8557357788086], [0.010055619291961193, 0.2667708098888397, 1.9821029901504517, -64.31785583496094], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 239]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.006355714285714284
aqi0.009313830882352941
dummy_trs1
dvarsnstd38.361631594599146
dvarsstd1.2124236503797468
dvarsvstd1.034845770886076
efc0.5466
fber582.8973
fdmean0.2545364471298427
fdnum175
fdperc73.52941176470588
fwhmavg3.3802383333333332
fwhmx3.0792
fwhmy3.931945
fwhmz3.12957
gcor0.00273459
gsrx0.022553103044629097
gsry0.04252329096198082
sizet238
sizex96
sizey96
sizez66
snr2.1620894741050085
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk28.3973
summarybgmad8.7648
summarybgmean61.3227
summarybgmedian29.0
summarybgn441240.0
summarybgp0521.0
summarybgp95212.0
summarybgstdv94.8159
summaryfgk1.1497
summaryfgmad287.3569
summaryfgmean738.039
summaryfgmedian706.0
summaryfgn167016.0
summaryfgp05205.0
summaryfgp951313.0
summaryfgstdv326.535
tsnr42.556094171712175
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