Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-161/figures/sub-161_ses-2_task-catLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-161/ses-2/func/sub-161_ses-2_task-catLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumafb5a43e12807704de600cca6c885adc

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime15:45:16.555000
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.997951, -0.0424054, 0.0479218, 0.0460148, 0.995975, -0.0769129]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_catLoc_run3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0530025
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_catLoc_run3
SeriesNumber10
ShimSetting[-1134, -1373, 635, 503, -81, -94, -66, 1]
SliceThickness2
SliceTiming[1.075, 0, 0.7375, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.7375, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.7375, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamecatLoc
TotalReadoutTime0.0551515
TxRefAmp218.627
dcmmetaaffine[[-1.995901107788086, 0.0920296162366867, 0.08893490582704544, 93.01691436767578], [0.08481071889400482, 1.9919508695602417, -0.1579207330942154, -71.13549041748047], [0.09584367275238037, 0.1538257598876953, 1.9917709827423096, -79.84556579589844], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 214]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.024832009345794395
aqi0.007246674205607475
dummy_trs0
dvarsnstd31.74394479507043
dvarsstd1.4033423349295773
dvarsvstd1.3226801755399058
efc0.5786
fber514.1754
fdmean0.11480551963105759
fdnum18
fdperc8.411214953271028
fwhmavg3.492983333333333
fwhmx3.159945
fwhmy3.9259
fwhmz3.393105
gcor0.0116899
gsrx0.026774708181619644
gsry0.036761268973350525
sizet214
sizex96
sizey96
sizez66
snr2.338115453057139
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk40.1726
summarybgmad11.5906
summarybgmean62.8829
summarybgmedian31.0
summarybgn416921.0
summarybgp0521.0
summarybgp95200.0
summarybgstdv98.3649
summaryfgk0.5181
summaryfgmad273.1245
summaryfgmean737.7242
summaryfgmedian705.0
summaryfgn191335.0
summaryfgp05261.0
summaryfgp951272.0
summaryfgstdv301.5241
tsnr44.885491100139916
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