Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-154/figures/sub-154_ses-3_task-langLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-154/ses-3/func/sub-154_ses-3_task-langLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume06111b8acd10c5267d104fe40180efd

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime11:42:30.612500
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.993688, -0.0702486, 0.0874601, 0.0834422, 0.983952, -0.157721]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.26
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_language_run1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0496398
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_language_run1
SeriesNumber11
ShimSetting[-1130, -1346, 684, 524, -106, 14, -39, -42]
SliceThickness2
SliceTiming[1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.605, 1.345, 0.6725, 1.4125, 0.3375]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamelangLoc
TotalReadoutTime0.0551515
TxRefAmp232.918
dcmmetaaffine[[-1.9873759746551514, 0.16688449680805206, 0.1499537229537964, 90.57545471191406], [0.14049722254276276, 1.967903971672058, -0.3280467391014099, -74.55470275878906], [0.1749202162027359, 0.3154420554637909, 1.9672060012817383, -96.70955657958984], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 239]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.011680920502092051
aqi0.00532356820083682
dummy_trs0
dvarsnstd30.509923197352954
dvarsstd1.2283065356302534
dvarsvstd1.1571277339075634
efc0.5532
fber635.1389
fdmean0.16911185260371195
fdnum81
fdperc33.89121338912134
fwhmavg3.6909383333333334
fwhmx3.31986
fwhmy4.18653
fwhmz3.566425
gcor0.0138155
gsrx0.0038467622362077236
gsry0.07246728241443634
sizet239
sizex96
sizey96
sizez66
snr2.3613671869793564
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk51.7897
summarybgmad8.5792
summarybgmean55.3454
summarybgmedian27.0
summarybgn434003.0
summarybgp0520.0
summarybgp95174.0
summarybgstdv91.8882
summaryfgk0.3195
summaryfgmad268.0905
summaryfgmean718.897
summaryfgmedian688.0
summaryfgn174253.0
summaryfgp05263.0
summaryfgp951243.0
summaryfgstdv291.3558
tsnr47.34508693381213
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