Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-151/figures/sub-151_ses-1_task-catLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-151/ses-1/func/sub-151_ses-1_task-catLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume6904e1a2e436a6f24f0c2cfc7db3ace

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime14:04:3.670000
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.99721, 0.0256127, 0.0701164, -0.00887652, 0.973316, -0.229297]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_catLoc_run1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0503528
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_catLoc_run1
SeriesNumber10
ShimSetting[-1143, -1321, 650, 400, -69, -65, -66, -8]
SliceThickness2
SliceTiming[1.075, 0, 0.74, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.065, 0.805, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamecatLoc
TotalReadoutTime0.0551515
TxRefAmp242.786
dcmmetaaffine[[-1.9944199323654175, -0.01775304041802883, 0.14823664724826813, 99.9979476928711], [-0.051225364208221436, 1.9466320276260376, -0.4560697376728058, -54.68618392944336], [0.14023278653621674, 0.45859402418136597, 1.9416555166244507, -96.10363006591797], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 214]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.008685373831775702
aqi0.008438074906542055
dummy_trs0
dvarsnstd32.27612763164319
dvarsstd1.1819405051643193
dvarsvstd1.078142329061033
efc0.6189
fber279.1768
fdmean0.12686602887534015
fdnum25
fdperc11.682242990654206
fwhmavg4.388693333333333
fwhmx4.02394
fwhmy4.904045
fwhmz4.238095
gcor0.0095519
gsrx0.03628463298082352
gsry0.10616356879472733
sizet214
sizex96
sizey96
sizez66
snr1.9932536133543264
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk23.7083
summarybgmad20.9989
summarybgmean110.0574
summarybgmedian40.0
summarybgn409228.0
summarybgp0524.0
summarybgp95451.0
summarybgstdv175.5176
summaryfgk0.6629
summaryfgmad306.431
summaryfgmean713.9182
summaryfgmedian670.0
summaryfgn199028.0
summaryfgp05182.0
summaryfgp951316.0
summaryfgstdv336.133
tsnr43.58477747044526
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