Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-148/figures/sub-148_ses-3_task-langLoc_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-148/ses-3/func/sub-148_ses-3_task-langLoc_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8d7d750cf4e13db24ed6f1e253df87e3

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime17:41:23.420000
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.997987, 0.0613091, 0.0162327, -0.0599905, 0.995596, -0.0720356]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_language_run3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0420128
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_language_run3
SeriesNumber13
ShimSetting[-1131, -1356, 701, 709, -53, -48, -13, 4]
SliceThickness2
SliceTiming[1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamelangLoc
TotalReadoutTime0.0551515
TxRefAmp214.028
dcmmetaaffine[[-1.9959735870361328, -0.11998108774423599, 0.04115527868270874, 100.94961547851562], [-0.1226181834936142, 1.9911925792694092, -0.14183363318443298, -60.2267951965332], [0.0324653685092926, 0.1440712809562683, 1.9945399761199951, -55.23643493652344], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 239]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.02306581589958159
aqi0.09552328284518828
dummy_trs0
dvarsnstd71.72947724138659
dvarsstd0.8530349936134453
dvarsvstd0.9538554553781509
efc0.5534
fber514.1281
fdmean0.8711965370206163
fdnum173
fdperc72.38493723849372
fwhmavg4.685638333333333
fwhmx3.911005
fwhmy4.99561
fwhmz5.1503
gcor0.0303821
gsrx0.003485532011836767
gsry0.054586321115493774
sizet239
sizex96
sizey96
sizez66
snr2.6110036572038067
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk28.3601
summarybgmad10.8311
summarybgmean55.9977
summarybgmedian30.0
summarybgn447471.0
summarybgp0521.0
summarybgp95185.0
summarybgstdv80.3268
summaryfgk0.3392
summaryfgmad238.7424
summaryfgmean692.5276
summaryfgmedian671.0
summaryfgn160785.0
summaryfgp05287.0
summaryfgp951142.0
summaryfgstdv256.9885
tsnr12.862993246410042
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