Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-147/figures/sub-147_ses-3_task-langLoc_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-147/ses-3/func/sub-147_ses-3_task-langLoc_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum03069753e8120209618a7c1f8f55a44f

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime18:45:46.567500
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.998183, 0.0178568, 0.0575566, -0.0174234, 0.999816, -0.00802286]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_language_run2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0503577
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_language_run2
SeriesNumber12
ShimSetting[-1136, -1386, 689, 581, -71, -103, -44, -18]
SliceThickness2
SliceTiming[1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.6075, 1.3475, 0.675, 1.415, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.6075, 1.3475, 0.675, 1.415, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.145, 0.4725, 1.2125, 0.54, 1.28, 0.6075, 1.3475, 0.675, 1.415, 0.3375]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamelangLoc
TotalReadoutTime0.0551515
TxRefAmp217.565
dcmmetaaffine[[-1.9963650703430176, -0.03484679013490677, 0.11537857353687286, 97.50405883789062], [-0.0357135646045208, 1.9996320009231567, -0.014010893180966377, -75.61785888671875], [0.11511322855949402, 0.016045719385147095, 1.9966200590133667, -46.63097381591797], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 239]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.004070462184873949
aqi0.003387274369747899
dummy_trs1
dvarsnstd31.58672061540083
dvarsstd1.1560725037974677
dvarsvstd1.041393875274262
efc0.5505
fber492.9468
fdmean0.14100479463991222
fdnum34
fdperc14.285714285714286
fwhmavg3.976366666666667
fwhmx3.7016
fwhmy4.40731
fwhmz3.82019
gcor0.0163378
gsrx0.06501728296279907
gsry0.03189821168780327
sizet238
sizex96
sizey96
sizez66
snr1.972792634409834
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk51.4296
summarybgmad13.1316
summarybgmean74.854
summarybgmedian32.0
summarybgn439890.0
summarybgp0521.0
summarybgp95268.0
summarybgstdv134.6907
summaryfgk1.485
summaryfgmad311.9725
summaryfgmean774.7368
summaryfgmedian717.0
summaryfgn168366.0
summaryfgp05257.0
summaryfgp951449.0
summaryfgstdv363.4431
tsnr51.215429393574595
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