Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-147/figures/sub-147_ses-2_task-catLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-147/ses-2/func/sub-147_ses-2_task-catLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumca1e6a78fa3ccfa4d30203e4ef7ce296

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime08:37:17.082500
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
DwellTime2.3e-06
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.999971, -0.0065392, 0.00391154, 0.00680666, 0.997323, -0.0728003]
ImageOrientationTextTra>Cor(-4.2)>Sag(0.2)
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_catLoc_run3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0508514
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_catLoc_run3
SeriesNumber10
ShimSetting[-1164, -1380, 676, 491, -111, -44, -31, -3]
SliceThickness2
SliceTiming[1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamecatLoc
TotalReadoutTime0.0551515
TxRefAmp217.84
dcmmetaaffine[[-1.9999419450759888, 0.013613312505185604, 0.006850022356957197, 100.11261749267578], [0.013078401796519756, 1.994646668434143, -0.14564962685108185, -80.90928649902344], [0.007823074236512184, 0.1456006020307541, 1.9946776628494263, -43.19398880004883], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 214]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0012534272300469484
aqi0.004066486807511737
dummy_trs1
dvarsnstd30.389132814622634
dvarsstd1.1123300640566036
dvarsvstd0.99672755509434
efc0.5531
fber487.9698
fdmean0.1389480609093646
fdnum29
fdperc13.615023474178404
fwhmavg3.96909
fwhmx3.728495
fwhmy4.33598
fwhmz3.842795
gcor0.0219142
gsrx0.059150513261556625
gsry0.031217729672789574
sizet213
sizex96
sizey96
sizez66
snr1.9764547100701346
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk72.0958
summarybgmad13.0928
summarybgmean72.5505
summarybgmedian32.0
summarybgn436630.0
summarybgp0521.0
summarybgp95258.0
summarybgstdv129.02
summaryfgk1.3265
summaryfgmad308.0437
summaryfgmean752.1448
summaryfgmedian704.0
summaryfgn171626.0
summaryfgp05214.0
summaryfgp951407.0
summaryfgstdv356.1923
tsnr49.83277692855336
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