Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-146/figures/sub-146_ses-3_task-langLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-146/ses-3/func/sub-146_ses-3_task-langLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum3b5ef9a8dc4ee478889c5d33f285c19a

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime17:09:55.957500
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.998758, -0.00110549, -0.0498217, 0.00139455, 0.999982, 0.00576764]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_language_run1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0528708
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_language_run1
SeriesNumber11
ShimSetting[-1174, -1387, 740, 589, -142, -18, -41, 49]
SliceThickness2
SliceTiming[1.075, 0, 0.74, 0.0675, 0.8075, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.0675, 0.8075, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335, 1.075, 0, 0.74, 0.0675, 0.8075, 0.1325, 0.8725, 0.2, 0.94, 0.2675, 1.0075, 0.4025, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.335]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamelangLoc
TotalReadoutTime0.0551515
TxRefAmp214.652
dcmmetaaffine[[-1.997515082359314, 0.002789104823023081, -0.09962886571884155, 100.03141784667969], [0.0022109709680080414, 1.9999648332595825, 0.011659911833703518, -63.44742202758789], [-0.09964337199926376, -0.011535285972058773, 1.9974830150604248, -37.550411224365234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 239]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.00090744769874477
aqi0.00358365489539749
dummy_trs0
dvarsnstd30.59944416525211
dvarsstd1.150926689453781
dvarsvstd1.010406087394959
efc0.5658
fber545.4985
fdmean0.12591660108101202
fdnum25
fdperc10.460251046025105
fwhmavg4.280349999999999
fwhmx3.884575
fwhmy5.03285
fwhmz3.923625
gcor0.0116556
gsrx-0.0009211343713104725
gsry0.09247689694166183
sizet239
sizex96
sizey96
sizez66
snr2.1224801426748194
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk59.6531
summarybgmad9.7083
summarybgmean66.1194
summarybgmedian30.0
summarybgn424130.0
summarybgp0522.0
summarybgp95227.0
summarybgstdv111.2756
summaryfgk0.8362
summaryfgmad298.1612
summaryfgmean739.3966
summaryfgmedian701.0
summaryfgn184126.0
summaryfgp05202.0
summaryfgp951319.0
summaryfgstdv330.2731
tsnr55.120033491868526
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