Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-145/figures/sub-145_ses-2_task-catLoc_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-145/ses-2/func/sub-145_ses-2_task-catLoc_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8a3e60271bcae8f38b7feae05683f650

AcquisitionMatrixPE72
AcquisitionNumber1
AcquisitionTime09:08:36.695000
BandwidthPerPixelPhaseEncode17.943
BaseResolution96
BodyPartExaminedBRAIN
CoilCombinationMethodSum of Squares
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
DerivedVendorReportedEchoSpacing0.000552897
DeviceSerialNumber166011
EchoTime0.03
EchoTrainLength58
EffectiveEchoSpacing0.000580542
FlipAngle62
ImageOrientationPatientDICOM[0.999867, -0.0133987, -0.00931608, 0.0106455, 0.9682, -0.249951]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressWest 130th Street 610,NY,NYC,US,10025
InstitutionNameMBBI
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling75
PhaseEncodingDirectionj-
PhaseEncodingSteps58
PhaseOversampling0.05
PhaseResolution0.75
PixelBandwidth2265
ProcedureStepDescriptionWhite^Word_recognition
ProtocolNamefunc_catLoc_run3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE96
RefLinesPE40
RepetitionTime1.5
SAR0.0481747
ScanOptionsPFP\FS
ScanningSequenceEP
SequenceName*epfid2d1_72
SequenceVariantSK\OSP
SeriesDescriptionfunc_catLoc_run3
SeriesNumber10
ShimSetting[-1160, -1346, 686, 501, -86, 177, -45, -24]
SliceThickness2
SliceTiming[1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375, 1.0775, 0, 0.74, 0.0675, 0.8075, 0.135, 0.875, 0.2025, 0.9425, 0.27, 1.01, 0.405, 1.1425, 0.47, 1.21, 0.5375, 1.2775, 0.605, 1.345, 0.6725, 1.4125, 0.3375]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2
StationNameAWP166011
TaskNamecatLoc
TotalReadoutTime0.0551515
TxRefAmp226.123
dcmmetaaffine[[-1.9997336864471436, 0.02129092812538147, -0.024737687781453133, 96.25889587402344], [0.026797372847795486, 1.936400055885315, -0.4996366500854492, -64.47509765625], [-0.01863216608762741, 0.49990156292915344, 1.9364274740219116, -84.03739929199219], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 95.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[96, 96, 66, 214]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0007649532710280374
aqi0.006583841074766355
dummy_trs0
dvarsnstd31.019371981971812
dvarsstd1.0602325693896713
dvarsvstd0.9790065708450708
efc0.6075
fber323.7452
fdmean0.10378241250521318
fdnum10
fdperc4.672897196261682
fwhmavg4.048261666666666
fwhmx3.917105
fwhmy4.394085
fwhmz3.833595
gcor0.0155395
gsrx0.08917626738548279
gsry0.03909789398312569
sizet214
sizex96
sizey96
sizez66
snr2.014704341467652
spacingtr1.5
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk28.2013
summarybgmad16.5719
summarybgmean103.5041
summarybgmedian36.0
summarybgn414455.0
summarybgp0523.0
summarybgp95437.0
summarybgstdv178.6956
summaryfgk0.6076
summaryfgmad284.2716
summaryfgmean687.9158
summaryfgmedian653.0
summaryfgn193801.0
summaryfgp05156.0
summaryfgp951278.0
summaryfgstdv324.1162
tsnr43.06979521061294
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