Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8032/ses-01/func/sub-8032_ses-01_task-RDMmotion_run-06_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum21781bf49660574edc24811df8d947f7

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime16:05:48.477500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.994355, -0.050014, 0.0935787, 0.049328, 0.998736, 0.00963087]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-06
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0457339
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-06
SeriesNumber17
ShimSetting[1756, -9107, 4339, 527, -159, -232, 72, 26]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp219.483
dcmmetaaffine[[-2.3841917514801025, 0.1182750016450882, 0.22546109557151794, 98.29522705078125], [0.11991982161998749, 2.3946969509124756, 0.011905092746019363, -102.90770721435547], [0.22437623143196106, -0.023092199116945267, 2.3893566131591797, -83.09690856933594], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00117890756302521
aqi0.0029135766386554616
dummy_trs6
dvarsnstd30.108917511016937
dvarsstd1.1744606909322033
dvarsvstd1.0182277849152543
efc0.5371
fber617.8635
fdmean0.089950218909838
fdnum0
fdperc0.0
fwhmavg3.2339204985260337
fwhmx3.1165054310154616
fwhmy3.2229145315034198
fwhmz3.3623415330592183
gcor0.0108599
gsrx-0.029078233987092972
gsry0.09279585629701614
sizet119
sizex88
sizey88
sizez60
snr2.1092483564634765
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk32.5174
summarybgmad10.2661
summarybgmean57.9765
summarybgmedian21.0
summarybgn354766.0
summarybgp0513.0
summarybgp95247.0
summarybgstdv102.1315
summaryfgk1.1324
summaryfgmad215.2639
summaryfgmean557.2969
summaryfgmedian525.0
summaryfgn109874.0
summaryfgp05178.0
summaryfgp951014.0
summaryfgstdv248.9027
tsnr59.91012310772203
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