Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8029/ses-01/func/sub-8029_ses-01_task-RDMmotion_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum545ffa46f8a4a212a5c222262a382a3b

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime12:59:38.377500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.988856, -0.0243481, 0.146871, 0.0500932, 0.983429, -0.174237]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0541391
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-01
SeriesNumber7
ShimSetting[1794, -9124, 4395, 416, 3, -419, -67, -127]
SliceThickness2.4
SliceTiming[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp215.57
dcmmetaaffine[[-2.371006965637207, 0.1201099082827568, 0.33646735548973083, 94.85494232177734], [0.05838017538189888, 2.3579940795898438, -0.4311659634113312, -83.82442474365234], [0.3521563708782196, 0.41777268052101135, 2.3368537425994873, -85.03907012939453], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0010600000000000002
aqi0.0038246895081967213
dummy_trs3
dvarsnstd30.848164850082632
dvarsstd1.1495576167768597
dvarsvstd1.0011761171074376
efc0.5218
fber579.9243
fdmean0.08495535472927786
fdnum1
fdperc0.819672131147541
fwhmavg3.4270368952518755
fwhmx3.405812732208873
fwhmy3.482748088354573
fwhmz3.3925498651921804
gcor0.00870065
gsrx0.01740063726902008
gsry0.07185596972703934
sizet122
sizex88
sizey88
sizez60
snr2.1591748111553875
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk57.3499
summarybgmad12.5778
summarybgmean55.0865
summarybgmedian23.0
summarybgn361131.0
summarybgp0513.0
summarybgp95203.0
summarybgstdv101.3164
summaryfgk0.5869
summaryfgmad229.0255
summaryfgmean574.8526
summaryfgmedian547.0
summaryfgn103509.0
summaryfgp05170.0
summaryfgp951029.0
summaryfgstdv253.3363
tsnr53.67610504711047
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