Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8023/ses-01/func/sub-8023_ses-01_task-RDMmotion_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum962e41c458eb24b5ef64a946bfc6890a

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime17:19:2.220000
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.999325, -0.0254469, 0.0265036, 0.0223288, 0.993464, 0.111941]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-04
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0470063
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-04
SeriesNumber13
ShimSetting[1761, -9114, 4397, 535, -68, -271, 87, 24]
SliceThickness2.4
SliceTiming[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp215.534
dcmmetaaffine[[-2.3961081504821777, 0.05353832617402077, 0.07002954185009003, 104.16842651367188], [0.06101468205451965, 2.3820555210113525, 0.26705774664878845, -105.55689239501953], [0.0635485127568245, -0.268405020236969, 2.3840672969818115, -57.11881637573242], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0011206451612903227
aqi0.004539325806451614
dummy_trs1
dvarsnstd38.86133088552843
dvarsstd1.293486068292683
dvarsvstd1.003212856260163
efc0.5015
fber822.233
fdmean0.12018083944304565
fdnum5
fdperc4.032258064516129
fwhmavg2.736198918340302
fwhmx2.576072819495114
fwhmy2.845765712928281
fwhmz2.786758222597511
gcor0.00778925
gsrx-0.01064710970968008
gsry0.059931136667728424
sizet124
sizex88
sizey88
sizez60
snr2.4196473546171693
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk23.7999
summarybgmad7.3532
summarybgmean40.9418
summarybgmedian18.0
summarybgn370695.0
summarybgp0512.0
summarybgp95158.0
summarybgstdv65.4239
summaryfgk0.4321
summaryfgmad182.9698
summaryfgmean520.328
summaryfgmedian515.0
summaryfgn93945.0
summaryfgp05132.0
summaryfgp95884.0
summaryfgstdv212.8398
tsnr56.69773102621548
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