Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8022/figures/sub-8022_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8022/ses-01/func/sub-8022_ses-01_task-RDMlocalizer_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumf1ce606e2464ad34cd081643a37ebc55

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime16:13:35.027500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.991057, 0.0969248, 0.0917156, -0.0828731, 0.98577, -0.146252]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-02
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0511148
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-02
SeriesNumber20
ShimSetting[1772, -9082, 4374, 419, -100, -83, 116, 0]
SliceThickness2.4
SliceTiming[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp242.525
dcmmetaaffine[[-2.376284122467041, -0.1987069845199585, 0.2510063946247101, 108.60192108154297], [-0.23239925503730774, 2.363607406616211, -0.32962509989738464, -75.3448486328125], [0.21990905702114105, 0.3506736159324646, 2.3639676570892334, -94.71685791015625], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0007946113989637305
aqi0.004251893471502591
dummy_trs2
dvarsnstd32.08520948880209
dvarsstd1.1613420845312497
dvarsvstd1.0121597180729167
efc0.5487
fber501.7896
fdmean0.1005121386015358
fdnum6
fdperc3.1088082901554404
fwhmavg3.074387281064176
fwhmx2.977211022173362
fwhmy3.0545717811665085
fwhmz3.191379039852657
gcor0.0201895
gsrx-0.02694275788962841
gsry0.11946189403533936
sizet193
sizex88
sizey88
sizez60
snr2.0979361834816497
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk23.4064
summarybgmad12.2142
summarybgmean64.8125
summarybgmedian23.0
summarybgn358974.0
summarybgp0513.0
summarybgp95282.0
summarybgstdv106.5029
summaryfgk1.1666
summaryfgmad214.4703
summaryfgmean538.9773
summaryfgmedian510.0
summaryfgn105666.0
summaryfgp05176.0
summaryfgp95984.0
summaryfgstdv243.0949
tsnr51.74503926129546
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