Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8019/ses-01/func/sub-8019_ses-01_task-RDMmotion_run-06_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum81f5baf339ffaba1d74b05789e10b2f0

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime11:50:32.580000
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.999123, -0.0122211, 0.040053, 0.0190096, 0.984603, -0.173771]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-06
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.048044
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-06
SeriesNumber22
ShimSetting[1758, -9041, 4363, 367, -132, -307, 37, -104]
SliceThickness2.4
SliceTiming[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp254.98
dcmmetaaffine[[-2.3956239223480225, 0.04557992145419121, 0.08955024182796478, 103.69342803955078], [0.029302820563316345, 2.3608083724975586, -0.4185121953487396, -79.79276275634766], [0.09603613615036011, 0.4166557490825653, 2.3615307807922363, -97.72188568115234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['115032.580000', '115033.780000', '115034.980000', '115036.180000', '115037.380000', '115038.580000', '115039.780000', '115040.980000', '115042.180000', '115043.380000', '115044.580000', '115045.780000', '115046.980000', '115048.180000', '115049.380000', '115050.580000', '115051.780000', '115052.980000', '115054.180000', '115055.380000', '115056.580000', '115057.780000', '115058.980000', '115100.180000', 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aor0.0008390983606557378
aqi0.0048895307377049176
dummy_trs3
dvarsnstd46.22007395190082
dvarsstd1.219926272396694
dvarsvstd1.0083663273553718
efc0.5386
fber475.605
fdmean0.2676801004947381
fdnum70
fdperc57.377049180327866
fwhmavg3.119516701497869
fwhmx3.0994893171175675
fwhmy3.209968938969336
fwhmz3.0490918484067033
gcor0.00685961
gsrx-0.00022850380628369749
gsry0.06268256157636642
sizet122
sizex88
sizey88
sizez60
snr2.3584155638913993
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.3999998569488525
summarybgk35.5419
summarybgmad13.5014
summarybgmean53.791
summarybgmedian24.0
summarybgn362321.0
summarybgp0513.0
summarybgp95205.0
summarybgstdv83.3508
summaryfgk0.3478
summaryfgmad200.4793
summaryfgmean528.5986
summaryfgmedian517.0
summaryfgn102319.0
summaryfgp05154.0
summaryfgp95909.0
summaryfgstdv219.2139
tsnr48.502231628401205
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