Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8019/figures/sub-8019_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8019/ses-01/func/sub-8019_ses-01_task-RDMlocalizer_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum3e5594f5d11ec90097ca05c9ed8173b2

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime12:02:33.482500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.999123, -0.0122211, 0.040053, 0.0190096, 0.984603, -0.173771]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0482992
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-01
SeriesNumber24
ShimSetting[1758, -9041, 4363, 367, -132, -307, 37, -104]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp254.98
dcmmetaaffine[[-2.3956239223480225, 0.04557992145419121, 0.08955024182796478, 103.69342803955078], [0.029302820563316345, 2.3608083724975586, -0.4185121953487396, -79.79276275634766], [0.09603613615036011, 0.4166557490825653, 2.3615307807922363, -97.72188568115234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0011052061855670106
aqi0.005106545
dummy_trs1
dvarsnstd42.96286611590674
dvarsstd1.210333691347151
dvarsvstd1.0096943680310877
efc0.5386
fber476.5557
fdmean0.22199140286148727
fdnum92
fdperc47.422680412371136
fwhmavg3.0746651046680022
fwhmx3.0590927290746746
fwhmy3.166110739520744
fwhmz2.998791845408589
gcor0.0102223
gsrx0.0008556901011615992
gsry0.061780668795108795
sizet194
sizex88
sizey88
sizez60
snr2.3465634755783293
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.3999998569488525
summarybgk35.1946
summarybgmad13.5116
summarybgmean53.4793
summarybgmedian24.0
summarybgn362283.0
summarybgp0513.0
summarybgp95205.0
summarybgstdv82.5961
summaryfgk0.342
summaryfgmad199.3182
summaryfgmean525.1816
summaryfgmedian513.0
summaryfgn102357.0
summaryfgp05150.0
summaryfgp95904.0
summaryfgstdv218.6165
tsnr47.83176184305921
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