Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8015/ses-01/func/sub-8015_ses-01_task-RDMmotion_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum753a9ad053b6e0741cd90600b4602969

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime17:38:23.382500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.99636, -0.0332566, 0.0784873, 0.0347937, 0.999227, -0.0182979]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-04
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0465768
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-04
SeriesNumber13
ShimSetting[1761, -9051, 4189, 364, -95, -156, 33, -30]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp245.597
dcmmetaaffine[[-2.389000177383423, 0.08342572301626205, 0.18676340579986572, 101.08338928222656], [0.07974020391702652, 2.395873785018921, -0.05030921474099159, -101.17401123046875], [0.18819110095500946, 0.04387340322136879, 2.392193078994751, -105.59710693359375], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0009719354838709678
aqi0.003545623306451613
dummy_trs1
dvarsnstd33.874547291463415
dvarsstd1.1347439038211375
dvarsvstd1.0013589986991869
efc0.4956
fber719.1574
fdmean0.2025352124232115
fdnum71
fdperc57.25806451612903
fwhmavg2.994831356300478
fwhmx2.8465956655424187
fwhmy3.038489885286538
fwhmz3.099408518072477
gcor0.0129389
gsrx-0.02077673375606537
gsry0.05364597588777542
sizet124
sizex88
sizey88
sizez60
snr2.2094266361554777
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.3999998569488525
summarybgk47.4969
summarybgmad9.5891
summarybgmean46.0781
summarybgmedian20.0
summarybgn375335.0
summarybgp0512.0
summarybgp95178.0
summarybgstdv77.4785
summaryfgk0.8782
summaryfgmad204.9937
summaryfgmean548.0672
summaryfgmedian531.0
summaryfgn89305.0
summaryfgp05141.0
summaryfgp95975.0
summaryfgstdv240.3325
tsnr54.21509292908013
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