Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8013/ses-01/func/sub-8013_ses-01_task-RDMmotion_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumb6d87388ca588efcb957d858a0aa1033

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime13:41:45.640000
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.997562, 0.0543138, -0.0438263, -0.0555977, 0.998043, -0.0286287]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-02
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0480046
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-02
SeriesNumber9
ShimSetting[1749, -9087, 4383, 363, -43, -237, -162, 6]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp218.677
dcmmetaaffine[[-2.391880750656128, -0.13330815732479095, -0.10124549269676208, 114.77777099609375], [-0.13022959232330322, 2.3930342197418213, -0.07438936084508896, -83.39673614501953], [-0.10508359968662262, 0.06864388287067413, 2.3967092037200928, -57.30762481689453], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0008543089430894308
aqi0.004410436016260163
dummy_trs2
dvarsnstd34.107012685983605
dvarsstd1.1900256255737705
dvarsvstd1.0065100983606559
efc0.551
fber447.8549
fdmean0.07517376664926415
fdnum1
fdperc0.8130081300813008
fwhmavg3.1055431031848357
fwhmx3.030857657729394
fwhmy3.1161676111071945
fwhmz3.169604040717918
gcor0.0162611
gsrx0.036783020943403244
gsry0.03907216340303421
sizet123
sizex88
sizey88
sizez60
snr2.282657835991174
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk21.6229
summarybgmad13.2711
summarybgmean61.2658
summarybgmedian24.0
summarybgn358923.0
summarybgp0513.0
summarybgp95263.0
summarybgstdv103.3946
summaryfgk0.6398
summaryfgmad189.8213
summaryfgmean515.0525
summaryfgmedian498.0
summaryfgn105717.0
summaryfgp05141.0
summaryfgp95906.0
summaryfgstdv218.1657
tsnr53.949874530080706
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