Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8011/figures/sub-8011_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8011/ses-01/func/sub-8011_ses-01_task-RDMlocalizer_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum19042001c57676c6cfcab8e7eebe339a

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime11:07:51.377500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.991968, -0.040582, 0.119806, 0.046086, 0.997988, -0.0435323]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0446741
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-01
SeriesNumber19
ShimSetting[1754, -9132, 4447, 592, -215, -218, -40, 12]
SliceThickness2.4
SliceTiming[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp217.084
dcmmetaaffine[[-2.3784677982330322, 0.11050157994031906, 0.2827153503894806, 95.86100769042969], [0.0973045825958252, 2.392904281616211, -0.11688947677612305, -93.6602783203125], [0.28726133704185486, 0.10437847673892975, 2.3804221153259277, -68.33333587646484], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0013180412371134019
aqi0.004248912113402062
dummy_trs1
dvarsnstd30.414267218808277
dvarsstd1.1540754674611393
dvarsvstd1.02128992761658
efc0.5443
fber577.2741
fdmean0.1371550448599109
fdnum35
fdperc18.04123711340206
fwhmavg3.0634420456360654
fwhmx2.9777406904245955
fwhmy3.121931402628491
fwhmz3.090654043855109
gcor0.0250347
gsrx-0.015612306073307991
gsry0.09867299348115921
sizet194
sizex88
sizey88
sizez60
snr2.356794294289581
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk43.6021
summarybgmad12.8314
summarybgmean53.991
summarybgmedian23.0
summarybgn351294.0
summarybgp0513.0
summarybgp95200.0
summarybgstdv87.9657
summaryfgk0.5219
summaryfgmad210.1436
summaryfgmean570.4505
summaryfgmedian546.0
summaryfgn113346.0
summaryfgp05211.0
summaryfgp95987.0
summaryfgstdv231.6696
tsnr52.64524062629789
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