Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8009/ses-01/func/sub-8009_ses-01_task-RDMmotion_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1d83b27db49346f7e56343d97671f6f0

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime09:40:50.967500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.993117, 0.0714519, 0.0928122, -0.0630036, 0.993859, -0.0909704]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-04
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0508552
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-04
SeriesNumber13
ShimSetting[1762, -9072, 4373, 250, -125, -185, -82, -40]
SliceThickness2.4
SliceTiming[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp231.45
dcmmetaaffine[[-2.381222724914551, -0.15106554329395294, 0.23698143661022186, 106.57600402832031], [-0.1713222712278366, 2.3830018043518066, -0.20279209315776825, -85.0994873046875], [0.22253845632076263, 0.2181222140789032, 2.379646062850952, -83.88670349121094], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['094050.967500', '094052.167500', '094053.367500', '094054.567500', '094055.767500', '094056.967500', '094058.167500', '094059.367500', '094100.567500', '094101.767500', '094102.967500', '094104.167500', '094105.367500', '094106.567500', '094107.767500', '094108.967500', '094110.167500', '094111.367500', '094112.567500', '094113.767500', '094114.967500', '094116.167500', '094117.367500', '094118.567500', '094119.767500', '094120.967500', '094122.167500', '094123.367500', '094124.567500', '094125.767500', '094126.967500', '094128.167500', '094129.367500', '094130.567500', '094131.767500', '094132.967500', '094134.167500', '094135.367500', '094136.567500', '094137.767500', '094138.967500', '094140.167500', '094141.367500', '094142.567500', '094143.767500', '094144.967500', '094146.167500', '094147.367500', '094148.567500', '094149.767500', '094150.967500', '094152.167500', '094153.367500', '094154.567500', '094155.767500', '094156.967500', '094158.167500', '094159.367500', '094200.567500', '094201.767500', '094202.967500', '094204.167500', '094205.367500', '094206.567500', '094207.767500', '094208.967500', '094210.167500', '094211.367500', '094212.567500', '094213.767500', '094214.967500', '094216.167500', '094217.367500', '094218.567500', '094219.767500', '094220.967500', '094222.167500', '094223.367500', '094224.567500', '094225.767500', '094226.967500', '094228.167500', '094229.367500', '094230.567500', '094231.767500', '094232.967500', '094234.167500', '094235.367500', '094236.567500', '094237.767500', '094238.967500', '094240.167500', '094241.367500', '094242.567500', '094243.767500', '094244.967500', '094246.167500', '094247.367500', '094248.567500', '094249.767500', '094250.967500', '094252.167500', '094253.367500', '094254.567500', '094255.767500', '094256.967500', '094258.167500', '094259.367500', '094300.567500', '094301.767500', '094302.967500', '094304.167500', '094305.367500', '094306.567500', '094307.767500', '094308.967500', '094310.167500', '094311.367500', '094312.567500', '094313.767500', '094314.967500', '094316.167500', '094317.367500', '094318.567500', '094319.767500'], 'ContentTime': ['094127.280000', '094127.283000', '094127.286000', '094127.289000', '094127.291000', '094127.294000', '094127.303000', '094127.306000', '094127.309000', '094127.311000', '094127.314000', '094127.317000', '094127.319000', '094127.322000', '094127.324000', '094127.327000', '094127.329000', '094127.332000', '094127.334000', '094127.337000', '094127.340000', '094127.342000', '094127.345000', '094127.348000', '094127.350000', '094127.353000', '094127.356000', '094127.358000', '094127.361000', '094207.276000', '094207.279000', '094207.281000', '094207.284000', '094207.286000', '094207.289000', '094207.296000', '094207.298000', '094207.301000', '094207.312000', '094207.314000', '094207.317000', '094207.319000', '094207.335000', '094207.337000', '094207.340000', '094207.342000', '094207.345000', '094207.348000', '094207.350000', '094207.353000', '094207.355000', '094207.358000', '094207.360000', '094207.363000', '094207.366000', '094207.368000', '094207.371000', '094207.373000', '094207.376000', '094207.378000', '094207.381000', '094207.383000', '094207.386000', '094247.275000', '094247.278000', '094247.281000', '094247.284000', '094247.286000', '094247.289000', '094247.291000', '094247.294000', '094247.297000', '094247.299000', '094247.302000', '094247.304000', '094247.307000', '094247.310000', '094247.312000', '094247.315000', '094247.317000', '094247.320000', '094247.322000', '094247.325000', '094247.327000', '094247.330000', '094247.333000', '094247.335000', '094247.338000', '094247.340000', '094247.343000', '094247.345000', '094247.348000', '094247.351000', '094247.353000', '094247.356000', '094247.359000', '094321.644000', '094321.648000', '094321.650000', '094321.653000', '094321.656000', '094321.658000', '094321.661000', '094321.663000', '094321.690000', '094321.693000', '094321.701000', '094321.704000', '094321.707000', '094321.709000', '094321.712000', '094321.714000', '094321.717000', '094321.719000', '094321.722000', '094321.725000', '094321.727000', '094321.730000', '094321.733000', '094321.735000', '094321.746000', '094321.748000', '094321.751000', '094321.754000', '094321.756000'], 'InstanceCreationTime': ['094127.280000', '094127.283000', '094127.286000', '094127.289000', '094127.291000', '094127.294000', '094127.303000', '094127.306000', '094127.309000', '094127.311000', '094127.314000', '094127.317000', '094127.319000', '094127.322000', '094127.324000', '094127.327000', '094127.329000', '094127.332000', '094127.334000', '094127.337000', '094127.340000', '094127.342000', '094127.345000', '094127.348000', '094127.350000', '094127.353000', '094127.356000', '094127.358000', '094127.361000', '094207.276000', '094207.279000', '094207.281000', '094207.284000', '094207.286000', '094207.289000', '094207.296000', '094207.298000', '094207.301000', '094207.312000', '094207.314000', '094207.317000', '094207.319000', '094207.335000', '094207.337000', '094207.340000', '094207.342000', '094207.345000', '094207.348000', '094207.350000', '094207.353000', '094207.355000', '094207.358000', '094207.360000', '094207.363000', '094207.366000', '094207.368000', '094207.371000', '094207.373000', '094207.376000', '094207.378000', '094207.381000', '094207.383000', '094207.386000', '094247.275000', '094247.278000', '094247.281000', '094247.284000', '094247.286000', '094247.289000', '094247.291000', '094247.294000', '094247.297000', '094247.299000', '094247.302000', '094247.304000', '094247.307000', '094247.310000', '094247.312000', '094247.315000', '094247.317000', '094247.320000', '094247.322000', '094247.325000', '094247.327000', '094247.330000', '094247.333000', '094247.335000', '094247.338000', '094247.340000', '094247.343000', '094247.345000', '094247.348000', '094247.351000', '094247.353000', '094247.356000', '094247.359000', '094321.644000', '094321.648000', '094321.650000', '094321.653000', '094321.656000', '094321.658000', '094321.661000', '094321.663000', '094321.690000', '094321.693000', '094321.701000', '094321.704000', '094321.707000', '094321.709000', '094321.712000', '094321.714000', '094321.717000', '094321.719000', '094321.722000', '094321.725000', '094321.727000', '094321.730000', '094321.733000', '094321.735000', '094321.746000', '094321.748000', '094321.751000', '094321.754000', '094321.756000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2451, 2420, 2385, 2347, 2356, 2291, 2341, 2378, 2328, 2372, 2393, 2323, 2329, 2361, 2303, 2340, 2366, 2332, 2338, 2317, 2343, 2317, 2336, 2336, 2330, 2342, 2371, 2301, 2326, 2323, 2344, 2326, 2324, 2340, 2325, 2359, 2344, 2299, 2332, 2355, 2309, 2331, 2372, 2307, 2337, 2319, 2317, 2348, 2295, 2333, 2351, 2317, 2350, 2311, 2331, 2300, 2317, 2316, 2331, 2363, 2334, 2345, 2304, 2336, 2297, 2341, 2347, 2314, 2323, 2344, 2295, 2349, 2357, 2307, 2329, 2356, 2332, 2353, 2337, 2338, 2354, 2318, 2338, 2350, 2314, 2339, 2327, 2316, 2349, 2311, 2303, 2322, 2309, 2325, 2340, 2337, 2350, 2325, 2306, 2316, 2320, 2323, 2340, 2313, 2349, 2335, 2310, 2363, 2315, 2315, 2308, 2341, 2318, 2318, 2317, 2341, 2311, 2337, 2626, 2567, 2507, 2480, 2443, 2510, 2523], 'WindowCenter': [641.0, 639.0, 637.0, 636.0, 636.0, 635.0, 636.0, 636.0, 635.0, 636.0, 635.0, 634.0, 634.0, 634.0, 635.0, 636.0, 637.0, 637.0, 636.0, 635.0, 634.0, 634.0, 635.0, 635.0, 635.0, 636.0, 636.0, 635.0, 635.0, 635.0, 636.0, 636.0, 636.0, 636.0, 634.0, 635.0, 635.0, 634.0, 634.0, 634.0, 635.0, 636.0, 636.0, 634.0, 635.0, 635.0, 635.0, 634.0, 633.0, 634.0, 634.0, 634.0, 635.0, 635.0, 635.0, 634.0, 634.0, 634.0, 637.0, 638.0, 639.0, 637.0, 635.0, 635.0, 634.0, 635.0, 636.0, 637.0, 637.0, 636.0, 634.0, 635.0, 636.0, 634.0, 634.0, 635.0, 635.0, 636.0, 635.0, 635.0, 634.0, 634.0, 635.0, 634.0, 634.0, 636.0, 637.0, 636.0, 636.0, 635.0, 634.0, 635.0, 634.0, 635.0, 636.0, 637.0, 636.0, 634.0, 633.0, 633.0, 634.0, 635.0, 635.0, 634.0, 635.0, 634.0, 634.0, 634.0, 634.0, 635.0, 636.0, 636.0, 636.0, 636.0, 634.0, 634.0, 634.0, 634.0, 637.0, 638.0, 638.0, 638.0, 638.0, 639.0, 638.0], 'WindowWidth': [1372.0, 1366.0, 1362.0, 1360.0, 1358.0, 1357.0, 1359.0, 1358.0, 1358.0, 1359.0, 1357.0, 1355.0, 1355.0, 1355.0, 1357.0, 1360.0, 1361.0, 1362.0, 1359.0, 1356.0, 1355.0, 1355.0, 1356.0, 1357.0, 1358.0, 1360.0, 1360.0, 1356.0, 1357.0, 1357.0, 1359.0, 1360.0, 1360.0, 1359.0, 1355.0, 1356.0, 1356.0, 1354.0, 1354.0, 1355.0, 1356.0, 1358.0, 1358.0, 1355.0, 1357.0, 1357.0, 1356.0, 1355.0, 1353.0, 1354.0, 1354.0, 1355.0, 1356.0, 1357.0, 1357.0, 1355.0, 1356.0, 1355.0, 1361.0, 1364.0, 1365.0, 1362.0, 1357.0, 1356.0, 1355.0, 1357.0, 1360.0, 1361.0, 1361.0, 1358.0, 1355.0, 1358.0, 1359.0, 1356.0, 1355.0, 1357.0, 1358.0, 1358.0, 1356.0, 1356.0, 1355.0, 1354.0, 1356.0, 1355.0, 1355.0, 1359.0, 1361.0, 1360.0, 1359.0, 1357.0, 1356.0, 1356.0, 1356.0, 1358.0, 1360.0, 1361.0, 1359.0, 1356.0, 1353.0, 1353.0, 1355.0, 1357.0, 1356.0, 1355.0, 1356.0, 1354.0, 1355.0, 1355.0, 1354.0, 1356.0, 1358.0, 1360.0, 1359.0, 1359.0, 1356.0, 1354.0, 1353.0, 1354.0, 1358.0, 1362.0, 1362.0, 1363.0, 1365.0, 1365.0, 1362.0]}, 'slices': {}}

aor0.005917642276422765
aqi0.003581199674796748
dummy_trs2
dvarsnstd32.75922518893443
dvarsstd1.2223097688524596
dvarsvstd1.0781782048360653
efc0.5672
fber336.9229
fdmean0.11035422312949951
fdnum3
fdperc2.4390243902439024
fwhmavg3.4970290221764095
fwhmx3.3920413576768036
fwhmy3.555183349672863
fwhmz3.543862359179562
gcor0.00824792
gsrx0.014793581329286098
gsry0.08193129301071167
sizet123
sizex88
sizey88
sizez60
snr1.9508164647069304
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk26.651
summarybgmad18.8881
summarybgmean83.0456
summarybgmedian30.0
summarybgn348932.0
summarybgp0515.0
summarybgp95369.0
summarybgstdv142.5972
summaryfgk0.976
summaryfgmad249.9932
summaryfgmean588.1186
summaryfgmedian545.0
summaryfgn115708.0
summaryfgp05192.0
summaryfgp951111.0
summaryfgstdv279.369
tsnr53.004599411040545
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download