Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8009/figures/sub-8009_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8009/ses-01/func/sub-8009_ses-01_task-RDMlocalizer_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumaa02caf284b7a489f7b5459122b6290f

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime10:21:39.785000
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.993117, 0.0714519, 0.0928122, -0.0630036, 0.993859, -0.0909704]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-02
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0511254
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-02
SeriesNumber20
ShimSetting[1762, -9072, 4373, 250, -125, -185, -82, -40]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp231.45
dcmmetaaffine[[-2.381222724914551, -0.15106554329395294, 0.23698143661022186, 106.57600402832031], [-0.1713222712278366, 2.3830018043518066, -0.20279209315776825, -85.0994873046875], [0.22253845632076263, 0.2181222140789032, 2.379646062850952, -83.88670349121094], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0009664432989690721
aqi0.003963461391752577
dummy_trs1
dvarsnstd32.18723710233162
dvarsstd1.1556050207772022
dvarsvstd1.014915094715026
efc0.5689
fber325.2302
fdmean0.09691442946767714
fdnum1
fdperc0.5154639175257731
fwhmavg3.5114011177248723
fwhmx3.4017714051581236
fwhmy3.5626529232001003
fwhmz3.569779024816393
gcor0.00837926
gsrx0.01638219505548477
gsry0.0804213434457779
sizet194
sizex88
sizey88
sizez60
snr1.9529807030381254
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk25.8723
summarybgmad18.8
summarybgmean84.8438
summarybgmedian30.0
summarybgn349343.0
summarybgp0515.0
summarybgp95378.0
summarybgstdv146.2985
summaryfgk0.9678
summaryfgmad248.1754
summaryfgmean584.8166
summaryfgmedian542.0
summaryfgn115297.0
summaryfgp05191.0
summaryfgp951106.0
summaryfgstdv277.5233
tsnr51.34274204261601
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