Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8008/ses-01/func/sub-8008_ses-01_task-RDMlocalizer_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumdd5e9a2c3384dbbf1d6859faac5e9f62

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime18:22:12.527500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.99735, 0.0725488, -0.00548851, -0.0727158, 0.996469, -0.041984]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.25
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0598159
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-01
SeriesNumber19
ShimSetting[1752, -9088, 4419, 342, -17, -59, -45, 0]
SliceThickness2.4
SliceTiming[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp234.758
dcmmetaaffine[[-2.3913726806640625, -0.17435261607170105, -0.005815757438540459, 115.19979095458984], [-0.17395231127738953, 2.3892600536346436, -0.10145245492458344, -85.26564025878906], [-0.013159940019249916, 0.10066623985767365, 2.3978476524353027, -58.80396270751953], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0015614948453608246
aqi0.00629777149484536
dummy_trs1
dvarsnstd34.94954944269431
dvarsstd1.1658282588601032
dvarsvstd1.0208467709844558
efc0.5661
fber370.6076
fdmean0.1202734584674514
fdnum10
fdperc5.154639175257732
fwhmavg3.193240992203179
fwhmx3.081559838282507
fwhmy3.239179934494054
fwhmz3.258983203832976
gcor0.0108343
gsrx0.02360181137919426
gsry0.08754387497901917
sizet194
sizex88
sizey88
sizez60
snr2.0911840053247266
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk17.4669
summarybgmad15.7889
summarybgmean73.5085
summarybgmedian26.0
summarybgn352792.0
summarybgp0513.0
summarybgp95330.0
summarybgstdv123.2464
summaryfgk0.6604
summaryfgmad216.8496
summaryfgmean534.9652
summaryfgmedian507.0
summaryfgn111848.0
summaryfgp05162.0
summaryfgp95984.0
summaryfgstdv242.4453
tsnr45.475259987520985
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