Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8007/figures/sub-8007_ses-01_task-RDMlocalizer_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8007/ses-01/func/sub-8007_ses-01_task-RDMlocalizer_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum695c904445c23b970b55cf664bce4fa5

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime16:32:46.242500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.998846, 0.0440895, -0.0190532, -0.0465803, 0.985949, -0.16042]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.25
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMlocalizer_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0444686
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMlocalizer_run-01
SeriesNumber19
ShimSetting[1747, -9098, 4389, 591, -72, -377, -51, -2]
SliceThickness2.4
SliceTiming[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMlocalizer
TotalReadoutTime0.0504612
TxRefAmp219.976
dcmmetaaffine[[-2.3949599266052246, -0.11168679594993591, -0.028110405430197716, 111.6758041381836], [-0.1057145819067955, 2.364037275314331, -0.3866933584213257, -82.14633178710938], [-0.04568440839648247, 0.3846430778503418, 2.368475914001465, -82.95899200439453], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 195]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0005211340206185567
aqi0.003990146494845361
dummy_trs1
dvarsnstd32.61911179740932
dvarsstd1.1451553749222798
dvarsvstd0.9978150684974088
efc0.5197
fber667.3421
fdmean0.1813648757109822
fdnum94
fdperc48.45360824742268
fwhmavg3.3402751332353127
fwhmx3.232265052914959
fwhmy3.3286396509425416
fwhmz3.4599206958484374
gcor0.00483759
gsrx-0.01298926305025816
gsry0.0780748724937439
sizet194
sizex88
sizey88
sizez60
snr2.190434659358834
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.4000000953674316
summarybgk38.8487
summarybgmad10.7221
summarybgmean49.1771
summarybgmedian21.0
summarybgn359259.0
summarybgp0513.0
summarybgp95180.0
summarybgstdv82.5341
summaryfgk0.8076
summaryfgmad215.2448
summaryfgmean573.9969
summaryfgmedian542.0
summaryfgn105381.0
summaryfgp05210.0
summaryfgp951040.0
summaryfgstdv247.4383
tsnr51.85572671308182
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