Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8004/ses-01/func/sub-8004_ses-01_task-RDMmotion_run-06_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumffe7293cb6f436799b4ed12a911ac40c

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime10:29:10.825000
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.997351, -0.068948, -0.0231983, 0.071491, 0.98795, 0.137271]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-06
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0437456
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-06
SeriesNumber18
ShimSetting[1740, -9175, 4427, 559, -64, -420, 144, 77]
SliceThickness2.4
SliceTiming[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.025, 0.4725, 1.1025]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp214.526
dcmmetaaffine[[-2.3913745880126953, 0.17141595482826233, -0.03228998929262161, 99.19923400878906], [0.16531838476657867, 2.368835210800171, 0.33255845308303833, -104.7194595336914], [-0.055623117834329605, -0.32913902401924133, 2.3766283988952637, -44.41888427734375], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['102910.825000', '102912.025000', '102913.225000', '102914.425000', '102915.625000', '102916.825000', '102918.025000', '102919.225000', '102920.425000', '102921.625000', '102922.825000', '102924.025000', '102925.225000', '102926.425000', '102927.625000', '102928.825000', '102930.025000', '102931.225000', '102932.425000', '102933.625000', '102934.825000', '102936.025000', '102937.225000', '102938.425000', '102939.625000', '102940.825000', '102942.025000', '102943.225000', '102944.425000', '102945.625000', '102946.825000', '102948.025000', '102949.225000', '102950.425000', '102951.625000', '102952.825000', '102954.025000', '102955.225000', '102956.425000', '102957.625000', '102958.825000', '103000.025000', '103001.225000', '103002.425000', '103003.625000', '103004.825000', '103006.025000', '103007.225000', '103008.425000', '103009.625000', '103010.825000', '103012.025000', '103013.225000', '103014.425000', '103015.625000', '103016.825000', '103018.025000', '103019.225000', '103020.425000', '103021.625000', '103022.825000', '103024.025000', '103025.225000', '103026.425000', '103027.625000', '103028.825000', '103030.025000', '103031.225000', '103032.425000', '103033.625000', '103034.825000', '103036.025000', '103037.225000', '103038.425000', '103039.625000', '103040.825000', '103042.025000', '103043.225000', '103044.425000', '103045.625000', '103046.825000', '103048.025000', '103049.225000', '103050.425000', '103051.625000', '103052.825000', '103054.025000', '103055.225000', '103056.425000', '103057.625000', '103058.825000', '103100.025000', '103101.225000', '103102.425000', '103103.625000', '103104.825000', '103106.025000', '103107.225000', '103108.425000', '103109.625000', '103110.825000', '103112.025000', '103113.225000', '103114.425000', '103115.625000', '103116.825000', '103118.025000', '103119.225000', '103120.425000', '103121.625000', '103122.825000', '103124.025000', '103125.225000', '103126.425000', '103127.625000', '103128.825000', '103130.025000', '103131.225000', '103132.425000', '103133.625000', '103134.825000', '103136.025000', '103137.225000', '103138.425000', '103139.625000'], 'ContentTime': ['102924.037000', '102924.040000', '102924.043000', '102924.046000', '102924.048000', '102924.068000', '102924.070000', '102924.075000', '102924.078000', '102924.080000', '103004.033000', '103004.036000', '103004.039000', '103004.041000', '103004.044000', '103004.047000', '103004.049000', '103004.052000', '103004.054000', '103004.057000', '103004.070000', '103004.073000', '103004.075000', '103004.078000', '103004.081000', '103004.083000', '103004.086000', '103004.089000', '103004.091000', '103004.094000', '103004.096000', '103004.099000', '103004.102000', '103004.104000', '103004.107000', '103004.109000', '103004.112000', '103004.115000', '103004.118000', '103004.121000', '103004.124000', '103004.127000', '103004.130000', '103044.033000', '103044.036000', '103044.039000', '103044.041000', '103044.044000', '103044.047000', '103044.049000', '103044.054000', '103044.057000', '103044.059000', '103044.062000', '103044.065000', '103044.067000', '103044.070000', '103044.072000', '103044.075000', '103044.077000', '103044.080000', '103044.082000', '103044.085000', '103044.087000', '103044.090000', '103044.093000', '103044.095000', '103044.098000', '103044.100000', '103044.103000', '103044.105000', '103044.108000', '103044.110000', '103044.113000', '103044.115000', '103044.118000', '103044.121000', '103124.033000', '103124.037000', '103124.039000', '103124.042000', '103124.044000', '103124.047000', '103124.050000', '103124.052000', '103124.055000', '103124.057000', '103124.060000', '103124.062000', '103124.065000', '103124.067000', '103124.070000', '103124.072000', '103124.075000', '103124.078000', '103124.080000', '103124.083000', '103124.085000', '103124.088000', '103124.091000', '103124.093000', '103124.096000', '103124.098000', '103124.101000', '103124.103000', '103124.106000', '103124.109000', '103124.111000', '103124.114000', '103124.116000', '103141.401000', '103141.403000', '103141.406000', '103141.409000', '103141.411000', '103141.414000', '103141.417000', '103141.419000', '103141.422000', '103141.425000', '103141.427000', '103141.430000', '103141.432000', '103141.435000', '103141.438000'], 'InstanceCreationTime': ['102924.037000', '102924.040000', '102924.043000', '102924.046000', '102924.048000', '102924.068000', '102924.070000', '102924.075000', '102924.078000', '102924.080000', '103004.033000', '103004.036000', '103004.039000', '103004.041000', '103004.044000', '103004.047000', '103004.049000', '103004.052000', '103004.054000', '103004.057000', '103004.070000', '103004.073000', '103004.075000', '103004.078000', '103004.081000', '103004.083000', '103004.086000', '103004.089000', '103004.091000', '103004.094000', '103004.096000', '103004.099000', '103004.102000', '103004.104000', '103004.107000', '103004.109000', '103004.112000', '103004.115000', '103004.118000', '103004.121000', '103004.124000', '103004.127000', '103004.130000', '103044.033000', '103044.036000', '103044.039000', '103044.041000', '103044.044000', '103044.047000', '103044.049000', '103044.054000', '103044.057000', '103044.059000', '103044.062000', '103044.065000', '103044.067000', '103044.070000', '103044.072000', '103044.075000', '103044.077000', '103044.080000', '103044.082000', '103044.085000', '103044.087000', '103044.090000', '103044.093000', '103044.095000', '103044.098000', '103044.100000', '103044.103000', '103044.105000', '103044.108000', '103044.110000', '103044.113000', '103044.115000', '103044.118000', '103044.121000', '103124.033000', '103124.037000', '103124.039000', '103124.042000', '103124.044000', '103124.047000', '103124.050000', '103124.052000', '103124.055000', '103124.057000', '103124.060000', '103124.062000', '103124.065000', '103124.067000', '103124.070000', '103124.072000', '103124.075000', '103124.078000', '103124.080000', '103124.083000', '103124.085000', '103124.088000', '103124.091000', '103124.093000', '103124.096000', '103124.098000', '103124.101000', '103124.103000', '103124.106000', '103124.109000', '103124.111000', '103124.114000', '103124.116000', '103141.401000', '103141.403000', '103141.406000', '103141.409000', '103141.411000', '103141.414000', '103141.417000', '103141.419000', '103141.422000', '103141.425000', '103141.427000', '103141.430000', '103141.432000', '103141.435000', '103141.438000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1744, 1636, 1673, 1898, 1551, 1485, 1661, 1680, 1610, 1448, 1406, 1581, 1625, 1803, 1614, 1423, 1467, 1575, 1635, 1593, 1718, 1622, 1591, 1529, 1613, 1581, 1582, 1545, 1711, 1430, 1504, 1586, 1690, 1477, 1518, 1462, 1604, 1427, 1498, 1476, 1532, 1455, 1554, 1718, 1604, 1510, 1630, 1848, 1609, 1478, 1589, 1414, 1392, 1588, 1521, 1368, 1647, 1707, 1487, 1640, 1722, 1478, 1557, 1442, 1441, 1441, 1664, 1558, 1723, 1432, 1489, 1627, 1566, 1685, 1451, 1778, 1505, 1471, 1660, 1654, 1537, 1672, 1476, 1650, 1468, 1421, 1604, 1480, 1563, 1638, 1642, 1525, 1664, 1510, 1633, 1464, 1473, 1619, 1522, 1450, 1634, 1530, 1442, 1481, 1568, 1644, 1521, 1503, 1571, 1413, 1511, 1632, 1593, 1683, 1509, 1530, 1588, 1674, 1564, 1687, 1566, 1517, 1499, 1847, 1579], 'WindowCenter': [544.0, 541.0, 541.0, 543.0, 538.0, 537.0, 539.0, 539.0, 538.0, 536.0, 534.0, 538.0, 538.0, 541.0, 538.0, 535.0, 536.0, 538.0, 539.0, 539.0, 541.0, 540.0, 540.0, 538.0, 540.0, 539.0, 539.0, 538.0, 541.0, 536.0, 537.0, 538.0, 540.0, 536.0, 537.0, 536.0, 538.0, 536.0, 537.0, 537.0, 538.0, 537.0, 538.0, 540.0, 538.0, 537.0, 539.0, 541.0, 538.0, 536.0, 538.0, 535.0, 535.0, 537.0, 537.0, 534.0, 539.0, 540.0, 537.0, 540.0, 541.0, 538.0, 539.0, 537.0, 536.0, 536.0, 540.0, 538.0, 540.0, 535.0, 536.0, 539.0, 538.0, 540.0, 536.0, 541.0, 538.0, 537.0, 540.0, 540.0, 538.0, 540.0, 537.0, 539.0, 536.0, 535.0, 538.0, 537.0, 538.0, 538.0, 538.0, 536.0, 539.0, 536.0, 539.0, 536.0, 537.0, 539.0, 537.0, 536.0, 539.0, 537.0, 535.0, 535.0, 536.0, 538.0, 536.0, 536.0, 538.0, 535.0, 537.0, 539.0, 538.0, 539.0, 536.0, 537.0, 538.0, 539.0, 538.0, 541.0, 539.0, 537.0, 537.0, 542.0, 537.0], 'WindowWidth': [1148.0, 1142.0, 1141.0, 1143.0, 1135.0, 1133.0, 1136.0, 1136.0, 1135.0, 1131.0, 1130.0, 1135.0, 1136.0, 1139.0, 1135.0, 1130.0, 1131.0, 1135.0, 1137.0, 1137.0, 1141.0, 1140.0, 1139.0, 1137.0, 1139.0, 1138.0, 1137.0, 1136.0, 1140.0, 1133.0, 1134.0, 1135.0, 1138.0, 1132.0, 1133.0, 1132.0, 1135.0, 1132.0, 1134.0, 1134.0, 1136.0, 1134.0, 1136.0, 1139.0, 1136.0, 1134.0, 1136.0, 1140.0, 1135.0, 1132.0, 1135.0, 1130.0, 1130.0, 1134.0, 1132.0, 1129.0, 1137.0, 1138.0, 1134.0, 1138.0, 1140.0, 1135.0, 1137.0, 1134.0, 1133.0, 1133.0, 1138.0, 1136.0, 1138.0, 1130.0, 1131.0, 1136.0, 1136.0, 1139.0, 1133.0, 1141.0, 1135.0, 1134.0, 1139.0, 1139.0, 1136.0, 1139.0, 1133.0, 1137.0, 1132.0, 1130.0, 1136.0, 1133.0, 1134.0, 1135.0, 1135.0, 1132.0, 1135.0, 1132.0, 1136.0, 1132.0, 1134.0, 1137.0, 1133.0, 1132.0, 1135.0, 1132.0, 1129.0, 1130.0, 1132.0, 1134.0, 1132.0, 1132.0, 1135.0, 1130.0, 1132.0, 1135.0, 1134.0, 1136.0, 1132.0, 1133.0, 1134.0, 1137.0, 1135.0, 1140.0, 1137.0, 1135.0, 1133.0, 1141.0, 1134.0]}, 'slices': {}}

aor0.0008089430894308943
aqi0.004000157886178861
dummy_trs2
dvarsnstd32.96933344549181
dvarsstd1.1749217123770486
dvarsvstd1.004422004016393
efc0.5152
fber769.2877
fdmean0.11172927878578284
fdnum4
fdperc3.252032520325203
fwhmavg2.8770075369964663
fwhmx2.743064290198957
fwhmy3.0489789849074214
fwhmz2.8389793358830215
gcor0.00539383
gsrx-0.013067961670458317
gsry0.08027539402246475
sizet123
sizex88
sizey88
sizez60
snr2.5360927103417525
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.3999998569488525
summarybgk21.7085
summarybgmad7.3889
summarybgmean45.3934
summarybgmedian18.0
summarybgn370237.0
summarybgp0512.0
summarybgp95183.0
summarybgstdv73.2059
summaryfgk0.1565
summaryfgmad183.7703
summaryfgmean516.5274
summaryfgmedian513.0
summaryfgn94403.0
summaryfgp05141.0
summaryfgp95854.0
summaryfgstdv202.2786
tsnr54.170637246686965
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download