Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-8004/ses-01/func/sub-8004_ses-01_task-RDMmotion_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum52ae45dac89fd3185bbaeab4c527b51c

AcquisitionMatrixPE88
AcquisitionNumber1
AcquisitionTime09:29:48.847500
BandwidthPerPixelPhaseEncode19.592
BaseResolution88
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.000580014
DeviceSerialNumber67050
DwellTime2.6e-06
EchoTime0.033
EchoTrainLength88
EffectiveEchoSpacing0.000580014
FlipAngle62
ImageOrientationPatientDICOM[0.997351, -0.068948, -0.0231983, 0.071491, 0.98795, 0.137271]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressOlive_Street_60_Providence_RI_US_02912
InstitutionNameBROWN_UNIVERSITY_MRF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps88
PhaseResolution1
PixelBandwidth2185
ProcedureStepDescriptionASHENHAV_1222
ProtocolNamefunc-bold_task-RDMmotion_run-01
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE88
RefLinesPE8
RepetitionTime1.2
SAR0.0437456
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_88
SequenceVariantSK
SeriesDescriptionfunc-bold_task-RDMmotion_run-01
SeriesNumber8
ShimSetting[1740, -9175, 4427, 559, -64, -420, 144, 77]
SliceThickness2.4
SliceTiming[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2.4
StationNameAWP67050
TaskNameRDMmotion
TotalReadoutTime0.0504612
TxRefAmp214.526
dcmmetaaffine[[-2.3913745880126953, 0.17141595482826233, -0.03228998929262161, 99.19923400878906], [0.16531838476657867, 2.368835210800171, 0.33255845308303833, -104.7194595336914], [-0.055623117834329605, -0.32913902401924133, 2.3766283988952637, -44.41888427734375], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[88, 88, 60, 125]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.000985983606557377
aqi0.0041731985245901625
dummy_trs3
dvarsnstd33.338885236115715
dvarsstd1.1987876510743796
dvarsvstd1.00744023553719
efc0.5128
fber805.8288
fdmean0.10107416219868391
fdnum0
fdperc0.0
fwhmavg2.8935398424557595
fwhmx2.765164385185462
fwhmy3.0676216391043787
fwhmz2.847833503077438
gcor0.00450451
gsrx-0.01456380169838667
gsry0.08086087554693222
sizet122
sizex88
sizey88
sizez60
snr2.538102075619411
spacingtr1.2000000476837158
spacingx2.3977272510528564
spacingy2.3977272510528564
spacingz2.3999998569488525
summarybgk21.4626
summarybgmad7.413
summarybgmean45.3191
summarybgmedian18.0
summarybgn370654.0
summarybgp0512.0
summarybgp95183.0
summarybgstdv73.2498
summaryfgk0.1469
summaryfgmad186.9902
summaryfgmean524.9852
summaryfgmedian521.0
summaryfgn93986.0
summaryfgp05144.0
summaryfgp95866.0
summaryfgstdv205.2704
tsnr53.726390681928024
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