Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-08/figures/sub-08_ses-coco_task-coco_run-07_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-08/ses-coco/func/sub-08_ses-coco_task-coco_run-07_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumb8580a57b8e178852adc874aae7dd9a1

AcquisitionMatrixPE100
AcquisitionNumber1
AcquisitionTime13:58:15.462500
BandwidthPerPixelPhaseEncode18.519
BaseResolution100
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20180622 GCC4.9.2
DerivedVendorReportedEchoSpacing0.000539986
DeviceSerialNumber166078
DwellTime2.1e-06
EchoTime0.034
EchoTrainLength100
EffectiveEchoSpacing0.000539986
FlipAngle90
ImageOrientationPatientDICOM[1, -0.000158747, -0.000795365, -3.68357e-08, 0.980649, -0.195774]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressStreet_StreetNo_Bei_Jing_District_CN_ZIP
InstitutionNameBeiJing_Normal_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps100
PhaseResolution1
PixelBandwidth2380
ProcedureStepDescriptionBNU_P2018_64CH_Zhen.ZongLei
ProtocolNamebold_100x100_s3_2x2x2_static_test_241
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE100
RepetitionTime2
SAR0.0772336
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_100
SequenceVariantSK
SeriesDescriptionbold_100x100_s3_2x2x2_static_test_241
SeriesNumber11
ShimSetting[-5456, -11488, -1248, 388, -33, -219, -155, 57]
SliceThickness2
SliceTiming[1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2
StationNameAWP166078
TaskNamecoco
TotalReadoutTime0.0534586
TxRefAmp222.948
dcmmetaaffine[[-1.9999992847442627, -7.367145116177198e-08, -0.0016221044352278113, 100.8614501953125], [0.0003174941521137953, 1.9612979888916016, -0.3915485441684723, -84.0661392211914], [-0.001590729458257556, 0.39154866337776184, 1.9612972736358643, -78.90291595458984], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 99.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[100, 100, 72, 241]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0007675833333333333
aqi0.005394655124999999
dummy_trs1
dvarsnstd37.07595692707113
dvarsstd1.0981423615481167
dvarsvstd0.9988315751882845
efc0.6068
fber113.3438
fdmean0.06367721404494435
fdnum0
fdperc0.0
fwhmavg3.5678716666666666
fwhmx3.52214
fwhmy3.54268
fwhmz3.638795
gcor0.00465123
gsrx0.005479211453348398
gsry0.0966331884264946
sizet240
sizex100
sizey100
sizez72
snr1.7549512129123268
spacingtr2.0
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk23.8473
summarybgmad27.6814
summarybgmean145.2416
summarybgmedian69.0
summarybgn534956.0
summarybgp0547.0
summarybgp95554.0
summarybgstdv202.3391
summaryfgk1.3001
summaryfgmad372.0621
summaryfgmean802.994
summaryfgmedian733.0
summaryfgn185044.0
summaryfgp05221.0
summaryfgp951597.0
summaryfgstdv417.6743
tsnr41.659742245450616
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