Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-11_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-07/ses-coco/func/sub-07_ses-coco_task-coco_run-11_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum97e1d37ef868274847374ed75749d92b

AcquisitionMatrixPE100
AcquisitionNumber1
AcquisitionTime10:46:35.045000
BandwidthPerPixelPhaseEncode18.519
BaseResolution100
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20180622 GCC4.9.2
DerivedVendorReportedEchoSpacing0.000539986
DeviceSerialNumber166078
DwellTime2.1e-06
EchoTime0.034
EchoTrainLength100
EffectiveEchoSpacing0.000539986
FlipAngle90
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.994881, -0.101056]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressStreet_StreetNo_Bei_Jing_District_CN_ZIP
InstitutionNameBeiJing_Normal_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps100
PhaseResolution1
PixelBandwidth2380
ProcedureStepDescriptionBNU_P2018_64CH_Zhen.ZongLei
ProtocolNamebold_100x100_s3_2x2x2_static_test_241
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE100
RepetitionTime2
SAR0.065392
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_100
SequenceVariantSK
SeriesDescriptionbold_100x100_s3_2x2x2_static_test_241
SeriesNumber16
ShimSetting[-5447, -11475, -1302, 268, 37, -87, -192, 94]
SliceThickness2
SliceTiming[1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2
StationNameAWP166078
TaskNamecoco
TotalReadoutTime0.0534586
TxRefAmp222.721
dcmmetaaffine[[-2.0, 0.0, 0.0, 102.69879150390625], [0.0, 1.989761471748352, -0.2021125853061676, -85.5859603881836], [0.0, 0.2021125853061676, 1.989761471748352, -80.63643646240234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 99.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[100, 100, 72, 241]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0007026970954356847
aqi0.008138988340248962
dummy_trs0
dvarsnstd43.310997009083295
dvarsstd1.1245802168333328
dvarsvstd0.9921857737916665
efc0.6285
fber106.8181
fdmean0.10533106118632783
fdnum6
fdperc2.4896265560165975
fwhmavg3.7291833333333333
fwhmx3.63015
fwhmy3.725055
fwhmz3.832345
gcor0.00950449
gsrx-0.006688337307423353
gsry0.09554135054349899
sizet241
sizex100
sizey100
sizez72
snr1.9711875088537236
spacingtr2.0
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk26.6093
summarybgmad25.3519
summarybgmean134.567
summarybgmedian67.0
summarybgn513040.0
summarybgp0546.0
summarybgp95486.0
summarybgstdv186.3697
summaryfgk0.446
summaryfgmad337.3382
summaryfgmean741.1844
summaryfgmedian696.0
summaryfgn206960.0
summaryfgp05211.0
summaryfgp951385.0
summaryfgstdv353.0858
tsnr35.618353127967566
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