Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-07/figures/sub-07_ses-coco_task-coco_run-07_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-07/ses-coco/func/sub-07_ses-coco_task-coco_run-07_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumda1f1cdf219a709fbb3dc753ca5c7df0

AcquisitionMatrixPE100
AcquisitionNumber1
AcquisitionTime10:10:33.325000
BandwidthPerPixelPhaseEncode18.519
BaseResolution100
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20180622 GCC4.9.2
DerivedVendorReportedEchoSpacing0.000539986
DeviceSerialNumber166078
DwellTime2.1e-06
EchoTime0.034
EchoTrainLength100
EffectiveEchoSpacing0.000539986
FlipAngle90
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.994881, -0.101056]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressStreet_StreetNo_Bei_Jing_District_CN_ZIP
InstitutionNameBeiJing_Normal_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps100
PhaseResolution1
PixelBandwidth2380
ProcedureStepDescriptionBNU_P2018_64CH_Zhen.ZongLei
ProtocolNamebold_100x100_s3_2x2x2_static_test_241
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE100
RepetitionTime2
SAR0.065392
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_100
SequenceVariantSK
SeriesDescriptionbold_100x100_s3_2x2x2_static_test_241
SeriesNumber12
ShimSetting[-5447, -11475, -1302, 268, 37, -87, -192, 94]
SliceThickness2
SliceTiming[1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2
StationNameAWP166078
TaskNamecoco
TotalReadoutTime0.0534586
TxRefAmp222.721
dcmmetaaffine[[-2.0, 0.0, 0.0, 102.69879150390625], [0.0, 1.989761471748352, -0.2021125853061676, -85.5859603881836], [0.0, 0.2021125853061676, 1.989761471748352, -80.63643646240234], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 99.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[100, 100, 72, 241]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0037224066390041497
aqi0.020594231701244817
dummy_trs0
dvarsnstd37.46370469725
dvarsstd1.0400343657916657
dvarsvstd0.9728668211250001
efc0.628
fber106.7945
fdmean0.06796419771172475
fdnum0
fdperc0.0
fwhmavg3.9717800000000003
fwhmx3.78386
fwhmy3.92424
fwhmz4.20724
gcor0.00269205
gsrx-0.011135241016745567
gsry0.09439779818058014
sizet241
sizex100
sizey100
sizez72
snr1.9734845898622215
spacingtr2.0
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk28.0548
summarybgmad26.3423
summarybgmean136.0276
summarybgmedian68.0
summarybgn513421.0
summarybgp0547.0
summarybgp95490.0
summarybgstdv188.3795
summaryfgk0.3659
summaryfgmad346.1231
summaryfgmean751.8515
summaryfgmedian707.0
summaryfgn206579.0
summaryfgp05212.0
summaryfgp951404.0
summaryfgstdv358.2487
tsnr28.155156166292727
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