Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-02/figures/sub-02_ses-coco_task-coco_run-08_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-02/ses-coco/func/sub-02_ses-coco_task-coco_run-08_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5b8b076fcefa838a373352544fdeab54

AcquisitionMatrixPE100
AcquisitionNumber1
AcquisitionTime15:54:56.875000
BandwidthPerPixelPhaseEncode18.519
BaseResolution100
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20180622 GCC4.9.2
DerivedVendorReportedEchoSpacing0.000539986
DeviceSerialNumber166078
DwellTime2.1e-06
EchoTime0.034
EchoTrainLength100
EffectiveEchoSpacing0.000539986
FlipAngle90
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.999781, -0.0209424]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressStreet_StreetNo_Bei_Jing_District_CN_ZIP
InstitutionNameBeiJing_Normal_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps100
PhaseResolution1
PixelBandwidth2380
ProcedureStepDescriptionBNU_P2018_64CH_Zhen.ZongLei
ProtocolNamebold_100x100_s3_2x2x2_static_test_241
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE100
RepetitionTime2
SAR0.0770821
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_100
SequenceVariantSK
SeriesDescriptionbold_100x100_s3_2x2x2_static_test_241
SeriesNumber12
ShimSetting[-5450, -11528, -1197, 543, 14, -244, 22, 63]
SliceThickness2
SliceTiming[1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2
StationNameAWP166078
TaskNamecoco
TotalReadoutTime0.0534586
TxRefAmp209.645
dcmmetaaffine[[-2.0, 0.0, 0.0, 100.67469787597656], [0.0, 1.9995613098144531, -0.04188483953475952, -82.38557434082031], [0.0, 0.04188483953475952, 1.9995613098144531, -38.7428092956543], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 99.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[100, 100, 72, 241]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0009149999999999999
aqi0.005278769124999999
dummy_trs1
dvarsnstd38.0368158507113
dvarsstd1.1296975676150633
dvarsvstd1.0035048147280332
efc0.5873
fber163.961
fdmean0.047058981579679186
fdnum5
fdperc2.0833333333333335
fwhmavg3.2634100000000004
fwhmx3.118015
fwhmy3.44212
fwhmz3.230095
gcor0.0147377
gsrx-0.01441874261945486
gsry0.08182402700185776
sizet240
sizex100
sizey100
sizez72
snr2.0853658429157003
spacingtr2.0
spacingx2.0
spacingy2.0
spacingz2.0
summarybgk22.6918
summarybgmad14.4183
summarybgmean96.7867
summarybgmedian56.0
summarybgn538703.0
summarybgp0544.0
summarybgp95314.0
summarybgstdv110.4643
summaryfgk0.2986
summaryfgmad333.2335
summaryfgmean754.6947
summaryfgmedian723.0
summaryfgn181297.0
summaryfgp05190.0
summaryfgp951368.0
summaryfgstdv346.7008
tsnr42.57885824725963
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