Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-01/figures/sub-01_ses-coco_task-coco_run-07_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-01/ses-coco/func/sub-01_ses-coco_task-coco_run-07_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumaa5447462dae0100bb9210a8934d07e0

AcquisitionMatrixPE100
AcquisitionNumber1
AcquisitionTime10:09:12.662500
BandwidthPerPixelPhaseEncode18.519
BaseResolution100
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20180622 GCC4.9.2
DerivedVendorReportedEchoSpacing0.000539986
DeviceSerialNumber166078
DwellTime2.1e-06
EchoTime0.034
EchoTrainLength100
EffectiveEchoSpacing0.000539986
FlipAngle90
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.983255, -0.182236]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressStreet_StreetNo_Bei_Jing_District_CN_ZIP
InstitutionNameBeiJing_Normal_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps100
PhaseResolution1
PixelBandwidth2380
ProcedureStepDescriptionBNU_P2018_64CH_Zhen.ZongLei
ProtocolNamebold_100x100_s3_2x2x2_static_test_241
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE100
RepetitionTime2
SAR0.0602094
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_100
SequenceVariantSK
SeriesDescriptionbold_100x100_s3_2x2x2_static_test_241
SeriesNumber11
ShimSetting[-5464, -11487, -1276, 377, -26, -110, -132, 54]
SliceThickness2
SliceTiming[1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495, 1.485, 0, 0.99, 0.0825, 1.0725, 0.165, 1.155, 0.2475, 1.2375, 0.33, 1.32, 0.4125, 1.4025, 0.5775, 1.5675, 0.66, 1.65, 0.7425, 1.7325, 0.825, 1.815, 0.9075, 1.8975, 0.495]
SoftwareVersionssyngo_MR_E11
SpacingBetweenSlices2
StationNameAWP166078
TaskNamecoco
TotalReadoutTime0.0534586
TxRefAmp206.412
dcmmetaaffine[[-2.0, 0.0, 0.0, 100.0], [0.0, 1.9665098190307617, -0.36447104811668396, -84.17688751220703], [0.0, 0.36447104811668396, 1.9665096998214722, -89.79066467285156], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 99.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[100, 100, 72, 241]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0005690871369294605
aqi0.006773705435684647
dummy_trs0
dvarsnstd37.68937248400001
dvarsstd1.1072213550833332
dvarsvstd0.9923657668750003
efc0.596
fber142.9922
fdmean0.07418086643329032
fdnum1
fdperc0.4149377593360996
fwhmavg3.713845073093975
fwhmx3.652935
fwhmy3.80966
fwhmz3.678940219281925
gcor0.0105024
gsrx0.013500039465725422
gsry0.07809334993362427
sizet241
sizex100
sizey100
sizez72
snr1.8938130310648298
spacingtr2.0
spacingx2.0
spacingy2.0
spacingz1.9999998807907104
summarybgk32.9788
summarybgmad21.2178
summarybgmean121.9327
summarybgmedian63.0
summarybgn532584.0
summarybgp0546.0
summarybgp95443.0
summarybgstdv165.6793
summaryfgk1.0544
summaryfgmad359.7772
summaryfgmean802.006
summaryfgmedian751.0
summaryfgn187416.0
summaryfgp05194.0
summaryfgp951524.0
summaryfgstdv396.5534
tsnr40.03392692422494
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