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Felix Hoffstaedter 57616349f0 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "caeb2c84-510d-44a5-bd1a-41da5e0515a1",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-06-08 01:23:30 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 12:55:39 +02:00
code SLURM submission setup 2026-04-01 12:55:53 +02:00
duct-logs Merge results 2026-06-08 00:20:18 +02:00
sourcedata Register ds004073 BIDS dataset as input 2026-04-01 12:55:48 +02:00
sub-BAN01 move data to dataset root 2026-06-08 00:21:16 +02:00
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sub-OXF27 move data to dataset root 2026-06-08 00:21:16 +02:00
.bidsignore move data to dataset root 2026-06-08 00:21:16 +02:00
.gitattributes keep non-binary files in git 2026-04-01 12:55:26 +02:00
.gitignore SLURM submission setup 2026-04-01 12:55:53 +02:00
.gitmodules Register ds004073 BIDS dataset as input 2026-04-01 12:55:48 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 12:55:25 +02:00
dataset_description.json move data to dataset root 2026-06-08 00:21:16 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-08 01:22:48 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-08 01:22:48 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-08 01:22:48 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-08 01:22:48 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-06-08 01:23:30 +02:00
README.md add README with Acknowledgements 2026-04-01 12:55:26 +02:00
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sub-OXF01_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
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sub-OXF01_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF01_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF01_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF01_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF01_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF02_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF03_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF04_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF05_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF06_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF07_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF08_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF09_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF10_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF11_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF12_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF13_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF14_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF15_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF16_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF17_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF18_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF19_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF20_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF21_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF22_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF23_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF24_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF25_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF26_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_T1w.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-PD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-SC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-SD_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-SG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-WC_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00
sub-OXF27_task-WG_bold.html move data to dataset root 2026-06-08 00:21:16 +02:00

README.md

ds004073 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds004073.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).