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Felix Hoffstaedter 3e9990e39e [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "14116dc4-00e8-440f-9a47-9326a093d990",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-04-01 17:17:50 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 12:58:43 +02:00
code SLURM submission setup 2026-04-01 13:00:09 +02:00
duct-logs Merge results 2026-04-01 16:19:16 +02:00
sourcedata Register ds004044 BIDS dataset as input 2026-04-01 13:00:03 +02:00
sub-01 move data to dataset root 2026-04-01 16:20:33 +02:00
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sub-68 move data to dataset root 2026-04-01 16:20:33 +02:00
.bidsignore move data to dataset root 2026-04-01 16:20:33 +02:00
.gitattributes keep non-binary files in git 2026-04-01 12:58:29 +02:00
.gitignore SLURM submission setup 2026-04-01 13:00:09 +02:00
.gitmodules Register ds004044 BIDS dataset as input 2026-04-01 13:00:03 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 12:58:27 +02:00
dataset_description.json move data to dataset root 2026-04-01 16:20:33 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 17:17:13 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 17:17:13 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 17:17:13 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 17:17:13 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-04-01 17:17:50 +02:00
README.md add README with Acknowledgements 2026-04-01 12:58:29 +02:00
sub-01_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
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sub-54_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-54_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-54_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-55_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-55_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-55_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-55_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
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sub-55_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-56_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-57_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-58_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-59_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-60_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-61_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-62_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-63_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-65_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-66_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-67_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_run-01_T1w.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-01_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-02_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-03_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-04_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-05_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00
sub-68_ses-1_task-motor_run-06_bold.html move data to dataset root 2026-04-01 16:20:33 +02:00

README.md

ds004044 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds004044.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).