openneuro-mriqc24.0.2/ds003752
Watch
2
0
Fork
You've already forked ds003752
 0
Code Activity
No description
24 commits 8 branches 0 tags 1 GiB
  • HTML 99.8%
  • Shell 0.2%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter 2d664da413 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "b8b63714-96ee-41aa-9216-49d87a591c3b",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-06-04 00:50:57 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 13:39:25 +02:00
code SLURM submission setup 2026-04-01 13:39:36 +02:00
duct-logs Merge results 2026-06-04 00:16:20 +02:00
sourcedata Register ds003752 BIDS dataset as input 2026-04-01 13:39:31 +02:00
sub-01 move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02 move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03 move data to dataset root 2026-06-04 00:16:29 +02:00
.bidsignore move data to dataset root 2026-06-04 00:16:29 +02:00
.gitattributes keep non-binary files in git 2026-04-01 13:39:13 +02:00
.gitignore SLURM submission setup 2026-04-01 13:39:36 +02:00
.gitmodules Register ds003752 BIDS dataset as input 2026-04-01 13:39:31 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 13:39:12 +02:00
dataset_description.json move data to dataset root 2026-06-04 00:16:29 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-04 00:50:28 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-04 00:50:28 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-04 00:50:28 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-04 00:50:28 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-06-04 00:50:57 +02:00
README.md add README with Acknowledgements 2026-04-01 13:39:13 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast22p5_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-LFContrast45_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_T1w.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-01_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast22p5_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-LFContrast45_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_T1w.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-02_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast22p5_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-LFContrast45_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_T1w.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre1_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-AP_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-01_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-02_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-03_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-04_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00
sub-03_ses-ResearchAguirre2_task-LFContrast_dir-PA_run-05_bold.html move data to dataset root 2026-06-04 00:16:29 +02:00

README.md

ds003752 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds003752.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).