Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-35/figures/sub-35_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-35/figures/sub-35_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-35/func/sub-35_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum87cd6a16744224c81663e02241a674dc

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:51:50.165000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.995584, -0.0516807, 0.078368, 0.0521763, 0.998629, -0.00428832]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.126972
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber4
ShimSetting[-9717, -13630, -8270, 343, -466, -608, -437, -304]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.9225]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp321.881
dcmmetaaffine[[-2.9867520332336426, 0.156529039144516, 0.37458696961402893, 87.67976379394531], [0.15504221618175507, 2.9958860874176025, -0.040120046585798264, -124.15106201171875], [0.23510412871837616, 0.012864965945482254, 4.78519344329834, -92.10333251953125], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0014336088154269973
aqi0.0025043125123966944
dummy_trs1
dvarsnstd21.983518719143653
dvarsstd1.3639799929558014
dvarsvstd0.990414395552486
efc0.5849
fber186.5537
fdmean0.09062079154171529
fdnum27
fdperc7.43801652892562
fwhmavg3.183124502641761
fwhmx3.3096833333333335
fwhmy3.3105233333333337
fwhmz2.929166841258616
gcor0.0459837
gsrx0.06424787640571594
gsry-0.007169866003096104
sizet363
sizex64
sizey64
sizez30
snr1.944504805933221
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.799999713897705
summarybgk15.7216
summarybgmad32.4375
summarybgmean103.8501
summarybgmedian52.0
summarybgn90544.0
summarybgp0528.0
summarybgp95387.0
summarybgstdv137.0587
summaryfgk0.1676
summaryfgmad363.2722
summaryfgmean757.9197
summaryfgmedian712.0
summaryfgn32336.0
summaryfgp05222.0
summaryfgp951426.0
summaryfgstdv366.1544
tsnr87.11770696355961
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