Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-35/figures/sub-35_task-asrt_run-1_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-35/figures/sub-35_task-asrt_run-1_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-35/func/sub-35_task-asrt_run-1_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum47d98a5c9e5517f43a4dd4b167da30cf

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:19:18.465000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.995584, -0.0516807, 0.078368, 0.0521763, 0.998629, -0.00428832]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.126972
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_1
SeriesNumber2
ShimSetting[-9717, -13630, -8270, 343, -466, -608, -437, -304]
SliceThickness4
SliceTiming[0.99, 0, 1.0575, 0.0675, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.3875, 0.3975, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.7175, 0.7275, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp321.881
dcmmetaaffine[[-2.9867520332336426, 0.156529039144516, 0.37458696961402893, 87.67976379394531], [0.15504221618175507, 2.9958860874176025, -0.040120046585798264, -124.15106201171875], [0.23510412871837616, 0.012864965945482254, 4.78519344329834, -92.10333251953125], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 514]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.004431719367588933
aqi0.008911763280632411
dummy_trs8
dvarsnstd21.172994515485158
dvarsstd1.2356968734455451
dvarsvstd0.9689678654455443
efc0.5816
fber192.0228
fdmean0.11088205826606574
fdnum52
fdperc10.276679841897232
fwhmavg3.309593115653184
fwhmx3.4446999999999997
fwhmy3.4592666666666667
fwhmz3.0248126802928854
gcor0.0151247
gsrx0.06344573199748993
gsry-0.009196720086038113
sizet506
sizex64
sizey64
sizez30
snr1.9496961313491548
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.799999713897705
summarybgk16.3423
summarybgmad31.2225
summarybgmean102.422
summarybgmedian51.0
summarybgn90913.0
summarybgp0528.0
summarybgp95382.0
summarybgstdv137.1244
summaryfgk0.1457
summaryfgmad363.5217
summaryfgmean758.0694
summaryfgmedian712.0
summaryfgn31967.0
summaryfgp05225.0
summaryfgp951421.0
summaryfgstdv365.1794
tsnr50.601404048502445
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