Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-32/figures/sub-32_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-32/figures/sub-32_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-32/func/sub-32_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9b8f2d45e9d90bbbeefde7299918ae86

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:35:29.552500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999241, 0.0111579, 0.0373235, -0.00872024, 0.997857, -0.0648484]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-6
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.132041
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber4
ShimSetting[-9725, -13758, -8509, 271, -299, -751, -143, -209]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.0675, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.385, 0.3975, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp309.938
dcmmetaaffine[[-2.997722864151001, -0.02616073004901409, 0.18224214017391205, 92.87248992919922], [-0.033473722636699677, 2.9935710430145264, -0.30947399139404297, -112.81219482421875], [0.11197056621313095, 0.19454532861709595, 4.786545276641846, -79.27487182617188], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0027677285318559552
aqi0.002213742105263158
dummy_trs3
dvarsnstd16.55359155327779
dvarsstd1.2971566098333331
dvarsvstd1.0036543247499998
efc0.5609
fber203.011
fdmean0.08697747835606787
fdnum29
fdperc8.033240997229917
fwhmavg3.415041624855666
fwhmx3.5801
fwhmy3.5084
fwhmz3.156624874566997
gcor0.0199216
gsrx0.051062893122434616
gsry0.020114123821258545
sizet361
sizex64
sizey64
sizez30
snr1.8911065115732977
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk34.7912
summarybgmad34.8761
summarybgmean97.0663
summarybgmedian51.0
summarybgn93350.0
summarybgp0525.0
summarybgp95328.0
summarybgstdv129.4508
summaryfgk0.4691
summaryfgmad375.3448
summaryfgmean783.3513
summaryfgmedian733.0
summaryfgn29530.0
summaryfgp05217.0
summaryfgp951495.0
summaryfgstdv387.5972
tsnr102.43217390729114
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