Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-28/figures/sub-28_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-28/figures/sub-28_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-28/func/sub-28_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum0dbdd295c792f29d11e36773eb5462b4

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime11:29:54.462500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999751, 0.00900232, 0.0204125, -0.00697969, 0.995252, -0.0970786]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.121835
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber4
ShimSetting[-9749, -13570, -8271, 280, -727, -590, -508, -116]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp332.13
dcmmetaaffine[[-2.999253273010254, -0.02093907818198204, 0.10170989483594894, 94.77017211914062], [-0.027006953954696655, 2.9857566356658936, -0.46517759561538696, -112.11984252929688], [0.061237625777721405, 0.29123589396476746, 4.776323318481445, -99.68211364746094], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.010071675824175825
aqi0.017276339478021974
dummy_trs0
dvarsnstd21.221353305151517
dvarsstd0.9043907548484846
dvarsvstd0.8221133560330585
efc0.6054
fber159.0779
fdmean0.11541750911797337
fdnum39
fdperc10.714285714285714
fwhmavg3.681486067258099
fwhmx3.8910666666666667
fwhmy3.8425999999999996
fwhmz3.310791535107631
gcor0.0305499
gsrx0.09869881719350815
gsry0.004102353472262621
sizet364
sizex64
sizey64
sizez30
snr1.8809677042267001
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk14.2308
summarybgmad38.4662
summarybgmean126.9279
summarybgmedian56.0
summarybgn89053.0
summarybgp0528.0
summarybgp95512.0
summarybgstdv176.4644
summaryfgk0.9622
summaryfgmad352.0284
summaryfgmean759.9204
summaryfgmedian710.0
summaryfgn33827.0
summaryfgp05219.0
summaryfgp951462.0
summaryfgstdv377.4597
tsnr45.885891863144934
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