Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-28/figures/sub-28_task-asrt_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-28/figures/sub-28_task-asrt_run-2_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-28/func/sub-28_task-asrt_run-2_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum39a14907c9fb8b3721353a74e4825947

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime11:16:24.255000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999751, 0.00900232, 0.0204125, -0.00697969, 0.995252, -0.0970786]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.121835
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_2
SeriesNumber3
ShimSetting[-9749, -13570, -8271, 280, -727, -590, -508, -116]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.2625, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.5925, 1.65, 0.66, 1.715, 0.725, 1.78, 0.7925, 1.8475, 0.8575, 1.9125, 0.9225]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp332.13
dcmmetaaffine[[-2.999253273010254, -0.02093907818198204, 0.10170989483594894, 94.77017211914062], [-0.027006953954696655, 2.9857566356658936, -0.46517759561538696, -112.11984252929688], [0.061237625777721405, 0.29123589396476746, 4.776323318481445, -99.68211364746094], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.015794049586776857
aqi0.015930196033057852
dummy_trs1
dvarsnstd20.326293990110482
dvarsstd1.0106055038674038
dvarsvstd0.9351518576795573
efc0.6033
fber160.498
fdmean0.10901010647789804
fdnum25
fdperc6.887052341597796
fwhmavg3.627061068583199
fwhmx3.8546
fwhmy3.8158333333333334
fwhmz3.210749872416263
gcor0.0801545
gsrx0.09603427350521088
gsry0.007271910086274147
sizet363
sizex64
sizey64
sizez30
snr1.854678319982309
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk15.4738
summarybgmad38.1842
summarybgmean124.3096
summarybgmedian56.0
summarybgn88722.0
summarybgp0528.0
summarybgp95498.0
summarybgstdv173.0934
summaryfgk0.9632
summaryfgmad356.5903
summaryfgmean757.2342
summaryfgmedian707.0
summaryfgn34158.0
summaryfgp05211.0
summaryfgp951467.0
summaryfgstdv381.1926
tsnr44.59750448470004
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