Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-27/figures/sub-27_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-27/figures/sub-27_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-27/func/sub-27_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5cc4c63930cf2c51741a418a5b50e742

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:07:1.732500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.996289, -0.0493235, 0.0705412, 0.0539571, 0.996402, -0.0653625]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.120662
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber8
ShimSetting[-9742, -13723, -8234, 338, -359, -784, -291, -346]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp299.346
dcmmetaaffine[[-2.988866090774536, 0.16187119483947754, 0.32190462946891785, 87.0198745727539], [0.14797063171863556, 2.9892051219940186, -0.3308453857898712, -120.31707000732422], [0.21162360906600952, 0.1960875242948532, 4.77775239944458, -75.0958023071289], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.010203333333333333
aqi0.003144866449035813
dummy_trs1
dvarsnstd22.832082882679558
dvarsstd1.42956885917127
dvarsvstd1.0853251997513806
efc0.5721
fber210.5858
fdmean0.1574750446624756
fdnum65
fdperc17.90633608815427
fwhmavg3.388426347711187
fwhmx3.611333333333333
fwhmy3.445133333333333
fwhmz3.108812376466895
gcor0.0403157
gsrx0.07691597938537598
gsry-0.002583572641015053
sizet363
sizex64
sizey64
sizez30
snr1.9046957549333843
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk21.3713
summarybgmad34.9821
summarybgmean104.5186
summarybgmedian53.0
summarybgn91147.0
summarybgp0528.0
summarybgp95387.0
summarybgstdv142.1196
summaryfgk0.3681
summaryfgmad396.3286
summaryfgmean831.0049
summaryfgmedian763.0
summaryfgn31733.0
summaryfgp05291.0
summaryfgp951578.0
summaryfgstdv400.5826
tsnr74.72288065357134
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