Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-27/figures/sub-27_task-asrt_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-27/figures/sub-27_task-asrt_run-2_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-27/func/sub-27_task-asrt_run-2_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum655fffc7c91daf4850403b11923625d8

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime09:53:28.570000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.996289, -0.0493235, 0.0705412, 0.0539571, 0.996402, -0.0653625]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.120662
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_2
SeriesNumber7
ShimSetting[-9742, -13723, -8234, 338, -359, -784, -291, -346]
SliceThickness4
SliceTiming[0.99, 0, 1.0575, 0.0675, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.3875, 0.3975, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.7175, 0.7275, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp299.346
dcmmetaaffine[[-2.988866090774536, 0.16187119483947754, 0.32190462946891785, 87.0198745727539], [0.14797063171863556, 2.9892051219940186, -0.3308453857898712, -120.31707000732422], [0.21162360906600952, 0.1960875242948532, 4.77775239944458, -75.0958023071289], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0040568421052631564
aqi0.0024328172880886427
dummy_trs3
dvarsnstd19.917112027305567
dvarsstd1.372557318555557
dvarsvstd1.0286361951388892
efc0.5709
fber212.4633
fdmean0.13104585970032728
fdnum45
fdperc12.465373961218837
fwhmavg3.4184096808182436
fwhmx3.6179666666666663
fwhmy3.511366666666667
fwhmz3.125895709121398
gcor0.0698554
gsrx0.07697606086730957
gsry-0.002083124592900276
sizet361
sizex64
sizey64
sizez30
snr1.8814492764658894
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk21.3845
summarybgmad33.7467
summarybgmean103.301
summarybgmedian52.0
summarybgn90901.0
summarybgp0528.0
summarybgp95379.0
summarybgstdv139.9723
summaryfgk0.3729
summaryfgmad400.4628
summaryfgmean831.1132
summaryfgmedian762.0
summaryfgn31979.0
summaryfgp05285.0
summaryfgp951587.0
summaryfgstdv405.0006
tsnr83.90097307506949
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