Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-26/figures/sub-26_task-asrt_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-26/figures/sub-26_task-asrt_run-2_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-26/func/sub-26_task-asrt_run-2_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum19112e7ff1ca7cb28b514cc06a59d157

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime13:12:7.520000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999847, -0.0106017, 0.0139245, 0.0104708, 0.999901, 0.00944156]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST
ProtocolNameEPI_DGIST_2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.139064
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_2
SeriesNumber3
ShimSetting[-9732, -13624, -8209, 149, -480, -819, -178, -118]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp340.654
dcmmetaaffine[[-2.9995405673980713, 0.031412262469530106, 0.06731146574020386, 93.32933044433594], [0.031805019825696945, 2.999701738357544, 0.04461270943284035, -122.28289031982422], [0.04177352786064148, -0.028324682265520096, 4.799320697784424, -84.0429916381836], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.004220082417582418
aqi0.007900714972527473
dummy_trs0
dvarsnstd23.966788799090924
dvarsstd1.2718070830027552
dvarsvstd0.9846570120110193
efc0.6175
fber121.1494
fdmean0.1221845432382956
fdnum47
fdperc12.912087912087912
fwhmavg3.241400616026955
fwhmx3.4119333333333333
fwhmy3.2686433333333333
fwhmz3.043625181414198
gcor0.149526
gsrx0.10177411139011383
gsry0.00509694404900074
sizet364
sizex64
sizey64
sizez30
snr1.9397633158495278
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.799999713897705
summarybgk16.0566
summarybgmad43.1054
summarybgmean119.1763
summarybgmedian60.0
summarybgn87977.0
summarybgp0528.0
summarybgp95432.0
summarybgstdv155.5326
summaryfgk0.9293
summaryfgmad323.6391
summaryfgmean721.2733
summaryfgmedian664.0
summaryfgn34903.0
summaryfgp05260.0
summaryfgp951356.0
summaryfgstdv342.3049
tsnr48.17039965814911
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