Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-21/figures/sub-21_task-asrt_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-21/figures/sub-21_task-asrt_run-2_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-21/func/sub-21_task-asrt_run-2_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum86779972ecc7aa5814223004d3cf00ba

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime15:57:29.730000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.997882, 0.0649542, 0.003466, -0.0645301, 0.995254, -0.0728384]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-6
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.137438
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_2
SeriesNumber3
ShimSetting[-9775, -13638, -8062, 400, -418, -42, -295, -73]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.2625, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.5925, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.9225]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp315.117
dcmmetaaffine[[-2.9936466217041016, -0.1935904622077942, 0.039267417043447495, 98.84180450439453], [-0.19486267864704132, 2.985761880874634, -0.34781011939048767, -110.55488586425781], [0.010398007929325104, 0.218515083193779, 4.7872209548950195, -62.67837905883789], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.005779035812672176
aqi0.01190813955922865
dummy_trs1
dvarsnstd26.793949659337024
dvarsstd1.2025828187569052
dvarsvstd0.9501146308563522
efc0.5867
fber189.6007
fdmean0.1711026263168357
fdnum67
fdperc18.457300275482094
fwhmavg3.4489278405729302
fwhmx3.6627666666666667
fwhmy3.523433333333333
fwhmz3.160583521718791
gcor0.0197468
gsrx0.09063062071800232
gsry0.012297219596803188
sizet363
sizex64
sizey64
sizez30
snr1.9013523368756893
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.799999713897705
summarybgk18.8595
summarybgmad36.9139
summarybgmean103.4383
summarybgmedian52.0
summarybgn88716.0
summarybgp0525.0
summarybgp95381.0
summarybgstdv138.6992
summaryfgk0.649
summaryfgmad366.3498
summaryfgmean770.5863
summaryfgmedian720.0
summaryfgn34164.0
summaryfgp05234.0
summaryfgp951464.0
summaryfgstdv378.6723
tsnr44.921492816880345
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